com.pixelmed.convert

Class NRRDToDicom

java.lang.Object

com.pixelmed.convert.NRRDToDicom

public class NRRDToDicom
extends java.lang.Object

A class for converting NRRD image input format files into images of a specified or appropriate SOP Class.

Constructor Summary

Constructors

Constructor and Description
NRRDToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber) Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.
NRRDToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber, java.lang.String modality, java.lang.String sopClass) Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Method Summary

Modifier and Type	Method and Description
static AttributeList	generateDICOMPixelDataModuleAttributesFromNRRDFile(java.io.File inputFile, NRRDHeader nrrd, AttributeList list) Using an NRRD image input file and header, create DICOM Pixel Data Module attributes.
static AttributeList	generateDimensions(AttributeList list) Create a Dimensions Module.
static AttributeList	generateGeometryFunctionalGroupsFromNRRDHeader(NRRDHeader nrrd, AttributeList list) Read a per-frame and shared functional group sequences for the geometry defined in a NRRD file header.
static void	main(java.lang.String[] arg) Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NRRDToDicom

public NRRDToDicom(java.lang.String inputFileName,
                   java.lang.String outputFileName,
                   java.lang.String patientName,
                   java.lang.String patientID,
                   java.lang.String studyID,
                   java.lang.String seriesNumber,
                   java.lang.String instanceNumber)
            throws java.io.IOException,
                   DicomException,
                   NRRDException

Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Parameters:

inputFileName -

outputFileName -

patientName -

patientID -

studyID -

seriesNumber -

instanceNumber -

Throws:

java.io.IOException

DicomException

NRRDException

NRRDToDicom

public NRRDToDicom(java.lang.String inputFileName,
                   java.lang.String outputFileName,
                   java.lang.String patientName,
                   java.lang.String patientID,
                   java.lang.String studyID,
                   java.lang.String seriesNumber,
                   java.lang.String instanceNumber,
                   java.lang.String modality,
                   java.lang.String sopClass)
            throws java.io.IOException,
                   DicomException,
                   NRRDException,
                   java.lang.NumberFormatException

Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Parameters:

inputFileName -

outputFileName -

patientName -

patientID -

studyID -

seriesNumber -

instanceNumber -

modality - may be null

sopClass - may be null

Throws:

java.io.IOException

DicomException

NRRDException

java.lang.NumberFormatException

Method Detail

generateDICOMPixelDataModuleAttributesFromNRRDFile

public static AttributeList generateDICOMPixelDataModuleAttributesFromNRRDFile(java.io.File inputFile,
                                                                               NRRDHeader nrrd,
                                                                               AttributeList list)
                                                                        throws java.io.IOException,
                                                                               DicomException,
                                                                               NRRDException,
                                                                               java.lang.NumberFormatException

Using an NRRD image input file and header, create DICOM Pixel Data Module attributes.

Parameters:

inputFile - an NRRD format image file

nrrd - an NRRD header already read from the inputFile

list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added

Throws:

java.io.IOException

DicomException

NRRDException

java.lang.NumberFormatException

generateDimensions

public static AttributeList generateDimensions(AttributeList list)
                                        throws DicomException

Create a Dimensions Module.

Parameters:

list - return attribute list with Dimensions Module added

Throws:

DicomException

generateGeometryFunctionalGroupsFromNRRDHeader

public static AttributeList generateGeometryFunctionalGroupsFromNRRDHeader(NRRDHeader nrrd,
                                                                           AttributeList list)
                                                                    throws DicomException,
                                                                           NRRDException,
                                                                           java.lang.NumberFormatException

Read a per-frame and shared functional group sequences for the geometry defined in a NRRD file header.

Parameters:

nrrd - an NRRD header

list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added return attribute list with per-frame and shared functional group sequences for geometry added

Throws:

DicomException

NRRDException

java.lang.NumberFormatException

main

public static void main(java.lang.String[] arg)

Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

Parameters:

arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class