com.pixelmed.apps

Class DoseReporterWithLegacyOCRAndAutoSendToRegistry

java.lang.Object

com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry

public class DoseReporterWithLegacyOCRAndAutoSendToRegistry
extends java.lang.Object

A class to wait for incoming dose screen images and SRs and send them to pre-configured registry.

The class has no public methods other than the constructor and a main method that is useful as a utility.

External (unsecure) SQL access to the database is possible if the Application.DatabaseServerName property is specified; further details are described in com.pixelmed.database.DatabaseInformationModel; for example:

% java -cp lib/additional/hsqldb.jar org.hsqldb.util.DatabaseManagerSwing --url "jdbc:hsqldb:hsql://localhost/testserverdb"
 

For how to configure the necessary properties file, see:

See Also:

NetworkApplicationProperties, DatabaseApplicationProperties

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurPatientStudySeriesInstanceModel
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurReceivedObjectHandler
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.ReceivedFileProcessor
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchDatabaseAndSendToRegistry
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchRemoteAEsForNewDoseInformation

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String	buildDate
protected DatabaseInformationModel	databaseInformationModel
protected static int	daysBackwardsFromTodayToQuery
protected java.lang.String	defaultDaysBackwardsFromTodayToQuery
protected java.lang.String	defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected static java.lang.String	defaultPropertiesFileName
protected java.lang.String	defaultRetainDeidentifiedFiles
protected java.lang.String	defaultRetainGeneratedRDSRFiles
protected java.lang.String	defaultRetainSourceFilesUsedForSRGeneration
protected java.lang.String	defaultSleepTimeBetweenPassesToProcessReceivedFiles
protected java.lang.String	defaultSleepTimeBetweenPassesToQueryRemoteAEs
protected java.lang.String	imageTypeColumnName
protected java.lang.String	instanceCreatorUIDColumnName
protected java.lang.String	instanceHasBeenSentToRegistryColumnName
protected java.lang.String	instanceIsExposureDoseSequenceColumnName
protected java.lang.String	instanceIsRadiationDoseScreenColumnName
protected java.lang.String	instanceIsRadiationDoseSRColumnName
protected java.lang.String	instanceLocalFileNameColumnName
protected java.lang.String	instanceLocalFileReferenceTypeColumnName
protected java.lang.String	instanceLocalParentReferenceColumnName
protected java.lang.String	instanceLocalPrimaryKeyColumnName
protected static int	intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected java.lang.String	manufacturerColumnName
protected static long	millisecondsPerDay
protected NetworkApplicationInformationFederated	networkApplicationInformation
protected NetworkApplicationProperties	networkApplicationProperties
protected java.lang.String	ourCalledAETitle
protected java.util.Properties	properties
protected static java.lang.String	propertyDelimitersForTokenizer_RemoteAEsForQuery
protected static java.lang.String	propertyName_DaysBackwardsFromTodayToQuery
protected static java.lang.String	propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected static java.lang.String	propertyName_RemoteAEsForQuery
protected static java.lang.String	propertyName_RetainDeidentifiedFiles
protected static java.lang.String	propertyName_RetainGeneratedRDSRFiles
protected static java.lang.String	propertyName_RetainSourceFilesUsedForSRGeneration
protected static java.lang.String	propertyName_SelectedDoseRegistry
protected static java.lang.String	propertyName_SleepTimeBetweenPassesToProcessReceivedFiles
protected static java.lang.String	propertyName_SleepTimeBetweenPassesToQueryRemoteAEs
protected java.util.List<java.lang.String>	remoteAEsForQuery
protected FTPRemoteHost	remoteHost
protected boolean	retainDeidentifiedFiles
protected boolean	retainGeneratedRDSRFiles
protected boolean	retainSourceFilesUsedForSRGeneration
protected java.io.File	savedImagesFolder
protected static int	sleepTimeBetweenPassesToProcessReceivedFiles
protected static int	sleepTimeBetweenPassesToQueryRemoteAEs
protected java.lang.String	sopClassUIDColumnName
protected java.lang.String	sourceApplicationEntityTitleColumnName
protected StoredFilePathStrategy	storedFilePathStrategy
protected java.lang.String	studyHasBeenProcessedColumnName
protected java.lang.String	studyInstanceUIDColumnName

Constructor Summary

Constructors

Constructor and Description
DoseReporterWithLegacyOCRAndAutoSendToRegistry(java.lang.String propertiesFileName) Wait for incoming dose screen images and SRs and send to registry.

Method Summary

Modifier and Type	Method and Description
protected boolean	alreadyHaveIt(AttributeList uniqueKeys)
protected java.lang.String	deidentifyFile(java.lang.String dicomFileName)
protected void	deleteFilesAndDatabaseRecords(java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
protected void	deleteFilesAndSetDatabaseRecordsToReferenced(java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
protected long	findCandidateFilesToSendToRegistry(InformationEntity ie, java.lang.String localPrimaryKeyValue, java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles, java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles, java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles, long mostRecentInsertionTime)
protected boolean	findSuitableSRFilesAndSendThemToRegistry(java.lang.String studyLocalPrimaryKeyValue)
protected java.lang.String	getBuildDate() Get the date the package was built.
protected void	loadProperties(java.lang.String propertiesFileName) Load properties.
static void	main(java.lang.String[] arg) Wait for incoming dose screen images and SRs and send to registry.
protected void	makeSRFileAndSendFileToRegistry(CTDose ctDose)
protected void	sendFilesToRegistry(java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)
protected void	sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)
protected void	sendFileToRegistry(java.lang.String fileName)
protected void	setSelectedDatabaseRecordHasBeenSentToRegistry(java.lang.String filename)
protected void	setSelectedDatabaseRecordIsExposureDoseSequence(java.lang.String filename)
protected void	setSelectedDatabaseRecordIsRadiationDoseScreen(java.lang.String filename)
protected void	setSelectedDatabaseRecordIsRadiationDoseSR(java.lang.String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

buildDate

protected java.lang.String buildDate

databaseInformationModel

protected DatabaseInformationModel databaseInformationModel

daysBackwardsFromTodayToQuery

protected static int daysBackwardsFromTodayToQuery

defaultDaysBackwardsFromTodayToQuery

protected java.lang.String defaultDaysBackwardsFromTodayToQuery

defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected java.lang.String defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

defaultPropertiesFileName

protected static java.lang.String defaultPropertiesFileName

defaultRetainDeidentifiedFiles

protected java.lang.String defaultRetainDeidentifiedFiles

defaultRetainGeneratedRDSRFiles

protected java.lang.String defaultRetainGeneratedRDSRFiles

defaultRetainSourceFilesUsedForSRGeneration

protected java.lang.String defaultRetainSourceFilesUsedForSRGeneration

defaultSleepTimeBetweenPassesToProcessReceivedFiles

protected java.lang.String defaultSleepTimeBetweenPassesToProcessReceivedFiles

defaultSleepTimeBetweenPassesToQueryRemoteAEs

protected java.lang.String defaultSleepTimeBetweenPassesToQueryRemoteAEs

imageTypeColumnName

protected java.lang.String imageTypeColumnName

instanceCreatorUIDColumnName

protected java.lang.String instanceCreatorUIDColumnName

instanceHasBeenSentToRegistryColumnName

protected java.lang.String instanceHasBeenSentToRegistryColumnName

instanceIsExposureDoseSequenceColumnName

protected java.lang.String instanceIsExposureDoseSequenceColumnName

instanceIsRadiationDoseScreenColumnName

protected java.lang.String instanceIsRadiationDoseScreenColumnName

instanceIsRadiationDoseSRColumnName

protected java.lang.String instanceIsRadiationDoseSRColumnName

instanceLocalFileNameColumnName

protected java.lang.String instanceLocalFileNameColumnName

instanceLocalFileReferenceTypeColumnName

protected java.lang.String instanceLocalFileReferenceTypeColumnName

instanceLocalParentReferenceColumnName

protected java.lang.String instanceLocalParentReferenceColumnName

instanceLocalPrimaryKeyColumnName

protected java.lang.String instanceLocalPrimaryKeyColumnName

intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static int intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

manufacturerColumnName

protected java.lang.String manufacturerColumnName

millisecondsPerDay

protected static final long millisecondsPerDay

See Also:

Constant Field Values

networkApplicationInformation

protected NetworkApplicationInformationFederated networkApplicationInformation

networkApplicationProperties

protected NetworkApplicationProperties networkApplicationProperties

ourCalledAETitle

protected java.lang.String ourCalledAETitle

properties

protected java.util.Properties properties

propertyDelimitersForTokenizer_RemoteAEsForQuery

protected static java.lang.String propertyDelimitersForTokenizer_RemoteAEsForQuery

propertyName_DaysBackwardsFromTodayToQuery

protected static java.lang.String propertyName_DaysBackwardsFromTodayToQuery

propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static java.lang.String propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

propertyName_RemoteAEsForQuery

protected static java.lang.String propertyName_RemoteAEsForQuery

propertyName_RetainDeidentifiedFiles

protected static java.lang.String propertyName_RetainDeidentifiedFiles

propertyName_RetainGeneratedRDSRFiles

protected static java.lang.String propertyName_RetainGeneratedRDSRFiles

propertyName_RetainSourceFilesUsedForSRGeneration

protected static java.lang.String propertyName_RetainSourceFilesUsedForSRGeneration

propertyName_SelectedDoseRegistry

protected static java.lang.String propertyName_SelectedDoseRegistry

propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

protected static java.lang.String propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

protected static java.lang.String propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

remoteAEsForQuery

protected java.util.List<java.lang.String> remoteAEsForQuery

remoteHost

protected FTPRemoteHost remoteHost

retainDeidentifiedFiles

protected boolean retainDeidentifiedFiles

retainGeneratedRDSRFiles

protected boolean retainGeneratedRDSRFiles

retainSourceFilesUsedForSRGeneration

protected boolean retainSourceFilesUsedForSRGeneration

savedImagesFolder

protected java.io.File savedImagesFolder

sleepTimeBetweenPassesToProcessReceivedFiles

protected static int sleepTimeBetweenPassesToProcessReceivedFiles

sleepTimeBetweenPassesToQueryRemoteAEs

protected static int sleepTimeBetweenPassesToQueryRemoteAEs

sopClassUIDColumnName

protected java.lang.String sopClassUIDColumnName

sourceApplicationEntityTitleColumnName

protected java.lang.String sourceApplicationEntityTitleColumnName

storedFilePathStrategy

protected StoredFilePathStrategy storedFilePathStrategy

studyHasBeenProcessedColumnName

protected java.lang.String studyHasBeenProcessedColumnName

studyInstanceUIDColumnName

protected java.lang.String studyInstanceUIDColumnName

Constructor Detail

DoseReporterWithLegacyOCRAndAutoSendToRegistry

public DoseReporterWithLegacyOCRAndAutoSendToRegistry(java.lang.String propertiesFileName)
                                               throws DicomException,
                                                      DicomNetworkException,
                                                      java.io.IOException,
                                                      java.lang.InterruptedException,
                                                      FTPException

Wait for incoming dose screen images and SRs and send to registry.

Parameters:

propertiesFileName -

Throws:

DicomException

DicomNetworkException

java.io.IOException

java.lang.InterruptedException

FTPException

Method Detail

alreadyHaveIt

protected boolean alreadyHaveIt(AttributeList uniqueKeys)
                         throws DicomException

Throws:

DicomException

deidentifyFile

protected java.lang.String deidentifyFile(java.lang.String dicomFileName)
                                   throws DicomException,
                                          java.io.IOException

Throws:

DicomException

java.io.IOException

deleteFilesAndDatabaseRecords

protected void deleteFilesAndDatabaseRecords(java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
                                      throws DicomException,
                                             java.io.IOException

Throws:

DicomException

java.io.IOException

deleteFilesAndSetDatabaseRecordsToReferenced

protected void deleteFilesAndSetDatabaseRecordsToReferenced(java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
                                                     throws DicomException,
                                                            java.io.IOException

Throws:

DicomException

java.io.IOException

findCandidateFilesToSendToRegistry

protected long findCandidateFilesToSendToRegistry(InformationEntity ie,
                                                  java.lang.String localPrimaryKeyValue,
                                                  java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles,
                                                  java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles,
                                                  java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles,
                                                  long mostRecentInsertionTime)
                                           throws DicomException

Throws:

DicomException

findSuitableSRFilesAndSendThemToRegistry

protected boolean findSuitableSRFilesAndSendThemToRegistry(java.lang.String studyLocalPrimaryKeyValue)
                                                    throws DicomException,
                                                           java.io.IOException,
                                                           java.security.NoSuchAlgorithmException,
                                                           java.lang.Exception

Throws:

DicomException

java.io.IOException

java.security.NoSuchAlgorithmException

java.lang.Exception

getBuildDate

protected java.lang.String getBuildDate()

Get the date the package was built.

Returns:

the build date

loadProperties

protected void loadProperties(java.lang.String propertiesFileName)
                       throws java.io.IOException

Load properties.

Throws:

java.io.IOException - thrown if properties file is missing

main

public static void main(java.lang.String[] arg)

Wait for incoming dose screen images and SRs and send to registry.

Parameters:

arg - none

makeSRFileAndSendFileToRegistry

protected void makeSRFileAndSendFileToRegistry(CTDose ctDose)

sendFilesToRegistry

protected void sendFilesToRegistry(java.util.Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)
                            throws DicomException,
                                   java.io.IOException,
                                   java.security.NoSuchAlgorithmException,
                                   java.lang.Exception

Throws:

DicomException

java.io.IOException

java.security.NoSuchAlgorithmException

java.lang.Exception

sendFileToRegistry

protected void sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)
                           throws DicomException,
                                  java.io.IOException,
                                  java.security.NoSuchAlgorithmException,
                                  java.lang.Exception

Throws:

DicomException

java.io.IOException

java.security.NoSuchAlgorithmException

java.lang.Exception

sendFileToRegistry

protected void sendFileToRegistry(java.lang.String fileName)
                           throws DicomException,
                                  java.io.IOException,
                                  java.security.NoSuchAlgorithmException,
                                  java.lang.Exception

Throws:

DicomException

java.io.IOException

java.security.NoSuchAlgorithmException

java.lang.Exception

setSelectedDatabaseRecordHasBeenSentToRegistry

protected void setSelectedDatabaseRecordHasBeenSentToRegistry(java.lang.String filename)
                                                       throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsExposureDoseSequence

protected void setSelectedDatabaseRecordIsExposureDoseSequence(java.lang.String filename)
                                                        throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsRadiationDoseScreen

protected void setSelectedDatabaseRecordIsRadiationDoseScreen(java.lang.String filename)
                                                       throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsRadiationDoseSR

protected void setSelectedDatabaseRecordIsRadiationDoseSR(java.lang.String filename)
                                                   throws DicomException

Throws:

DicomException