com.pixelmed.apps

Class DoseReporterWithLegacyOCRAndAutoSendToRegistry

java.lang.Object

com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry

public class DoseReporterWithLegacyOCRAndAutoSendToRegistry
extends Object

A class to wait for incoming dose screen images and SRs and send them to pre-configured registry.

The class has no public methods other than the constructor and a main method that is useful as a utility.

External (unsecure) SQL access to the database is possible if the Application.DatabaseServerName property is specified; further details are described in com.pixelmed.database.DatabaseInformationModel; for example:

% java -cp lib/additional/hsqldb.jar org.hsqldb.util.DatabaseManagerSwing --url "jdbc:hsqldb:hsql://localhost/testserverdb"
 

For how to configure the necessary properties file, see:

See Also:

NetworkApplicationProperties, DatabaseApplicationProperties

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurPatientStudySeriesInstanceModel
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurReceivedObjectHandler
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.ReceivedFileProcessor
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchDatabaseAndSendToRegistry
protected class	DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchRemoteAEsForNewDoseInformation

Field Summary

Fields

Modifier and Type	Field and Description
protected String	buildDate
protected DatabaseInformationModel	databaseInformationModel
protected static int	daysBackwardsFromTodayToQuery
protected String	defaultDaysBackwardsFromTodayToQuery
protected String	defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected static String	defaultPropertiesFileName
protected String	defaultRetainDeidentifiedFiles
protected String	defaultRetainGeneratedRDSRFiles
protected String	defaultRetainSourceFilesUsedForSRGeneration
protected String	defaultSleepTimeBetweenPassesToProcessReceivedFiles
protected String	defaultSleepTimeBetweenPassesToQueryRemoteAEs
protected String	imageTypeColumnName
protected String	instanceCreatorUIDColumnName
protected String	instanceHasBeenSentToRegistryColumnName
protected String	instanceIsExposureDoseSequenceColumnName
protected String	instanceIsRadiationDoseScreenColumnName
protected String	instanceIsRadiationDoseSRColumnName
protected String	instanceLocalFileNameColumnName
protected String	instanceLocalFileReferenceTypeColumnName
protected String	instanceLocalParentReferenceColumnName
protected String	instanceLocalPrimaryKeyColumnName
protected static int	intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected String	manufacturerColumnName
protected static long	millisecondsPerDay
protected NetworkApplicationInformationFederated	networkApplicationInformation
protected NetworkApplicationProperties	networkApplicationProperties
protected String	ourCalledAETitle
protected Properties	properties
protected static String	propertyDelimitersForTokenizer_RemoteAEsForQuery
protected static String	propertyName_DaysBackwardsFromTodayToQuery
protected static String	propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy
protected static String	propertyName_RemoteAEsForQuery
protected static String	propertyName_RetainDeidentifiedFiles
protected static String	propertyName_RetainGeneratedRDSRFiles
protected static String	propertyName_RetainSourceFilesUsedForSRGeneration
protected static String	propertyName_SelectedDoseRegistry
protected static String	propertyName_SleepTimeBetweenPassesToProcessReceivedFiles
protected static String	propertyName_SleepTimeBetweenPassesToQueryRemoteAEs
protected List<String>	remoteAEsForQuery
protected FTPRemoteHost	remoteHost
protected boolean	retainDeidentifiedFiles
protected boolean	retainGeneratedRDSRFiles
protected boolean	retainSourceFilesUsedForSRGeneration
protected File	savedImagesFolder
protected static int	sleepTimeBetweenPassesToProcessReceivedFiles
protected static int	sleepTimeBetweenPassesToQueryRemoteAEs
protected String	sopClassUIDColumnName
protected String	sourceApplicationEntityTitleColumnName
protected StoredFilePathStrategy	storedFilePathStrategy
protected String	studyHasBeenProcessedColumnName
protected String	studyInstanceUIDColumnName

Constructor Summary

Constructors

Constructor and Description
DoseReporterWithLegacyOCRAndAutoSendToRegistry(String propertiesFileName) Wait for incoming dose screen images and SRs and send to registry.

Method Summary

Modifier and Type	Method and Description
protected boolean	alreadyHaveIt(AttributeList uniqueKeys)
protected String	deidentifyFile(String dicomFileName)
protected void	deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
protected void	deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
protected long	findCandidateFilesToSendToRegistry(InformationEntity ie, String localPrimaryKeyValue, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles, long mostRecentInsertionTime)
protected boolean	findSuitableSRFilesAndSendThemToRegistry(String studyLocalPrimaryKeyValue)
protected String	getBuildDate() Get the date the package was built.
protected void	loadProperties(String propertiesFileName) Load properties.
static void	main(String[] arg) Wait for incoming dose screen images and SRs and send to registry.
protected void	makeSRFileAndSendFileToRegistry(CTDose ctDose)
protected void	sendFilesToRegistry(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)
protected void	sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)
protected void	sendFileToRegistry(String fileName)
protected void	setSelectedDatabaseRecordHasBeenSentToRegistry(String filename)
protected void	setSelectedDatabaseRecordIsExposureDoseSequence(String filename)
protected void	setSelectedDatabaseRecordIsRadiationDoseScreen(String filename)
protected void	setSelectedDatabaseRecordIsRadiationDoseSR(String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

buildDate

protected String buildDate

databaseInformationModel

protected DatabaseInformationModel databaseInformationModel

daysBackwardsFromTodayToQuery

protected static int daysBackwardsFromTodayToQuery

defaultDaysBackwardsFromTodayToQuery

protected String defaultDaysBackwardsFromTodayToQuery

defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected String defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

defaultPropertiesFileName

protected static String defaultPropertiesFileName

defaultRetainDeidentifiedFiles

protected String defaultRetainDeidentifiedFiles

defaultRetainGeneratedRDSRFiles

protected String defaultRetainGeneratedRDSRFiles

defaultRetainSourceFilesUsedForSRGeneration

protected String defaultRetainSourceFilesUsedForSRGeneration

defaultSleepTimeBetweenPassesToProcessReceivedFiles

protected String defaultSleepTimeBetweenPassesToProcessReceivedFiles

defaultSleepTimeBetweenPassesToQueryRemoteAEs

protected String defaultSleepTimeBetweenPassesToQueryRemoteAEs

imageTypeColumnName

protected String imageTypeColumnName

instanceCreatorUIDColumnName

protected String instanceCreatorUIDColumnName

instanceHasBeenSentToRegistryColumnName

protected String instanceHasBeenSentToRegistryColumnName

instanceIsExposureDoseSequenceColumnName

protected String instanceIsExposureDoseSequenceColumnName

instanceIsRadiationDoseScreenColumnName

protected String instanceIsRadiationDoseScreenColumnName

instanceIsRadiationDoseSRColumnName

protected String instanceIsRadiationDoseSRColumnName

instanceLocalFileNameColumnName

protected String instanceLocalFileNameColumnName

instanceLocalFileReferenceTypeColumnName

protected String instanceLocalFileReferenceTypeColumnName

instanceLocalParentReferenceColumnName

protected String instanceLocalParentReferenceColumnName

instanceLocalPrimaryKeyColumnName

protected String instanceLocalPrimaryKeyColumnName

intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static int intervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

manufacturerColumnName

protected String manufacturerColumnName

millisecondsPerDay

protected static final long millisecondsPerDay

See Also:

Constant Field Values

networkApplicationInformation

protected NetworkApplicationInformationFederated networkApplicationInformation

networkApplicationProperties

protected NetworkApplicationProperties networkApplicationProperties

ourCalledAETitle

protected String ourCalledAETitle

properties

protected Properties properties

propertyDelimitersForTokenizer_RemoteAEsForQuery

protected static String propertyDelimitersForTokenizer_RemoteAEsForQuery

propertyName_DaysBackwardsFromTodayToQuery

protected static String propertyName_DaysBackwardsFromTodayToQuery

propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

protected static String propertyName_IntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy

propertyName_RemoteAEsForQuery

protected static String propertyName_RemoteAEsForQuery

propertyName_RetainDeidentifiedFiles

protected static String propertyName_RetainDeidentifiedFiles

propertyName_RetainGeneratedRDSRFiles

protected static String propertyName_RetainGeneratedRDSRFiles

propertyName_RetainSourceFilesUsedForSRGeneration

protected static String propertyName_RetainSourceFilesUsedForSRGeneration

propertyName_SelectedDoseRegistry

protected static String propertyName_SelectedDoseRegistry

propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

protected static String propertyName_SleepTimeBetweenPassesToProcessReceivedFiles

propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

protected static String propertyName_SleepTimeBetweenPassesToQueryRemoteAEs

remoteAEsForQuery

protected List<String> remoteAEsForQuery

remoteHost

protected FTPRemoteHost remoteHost

retainDeidentifiedFiles

protected boolean retainDeidentifiedFiles

retainGeneratedRDSRFiles

protected boolean retainGeneratedRDSRFiles

retainSourceFilesUsedForSRGeneration

protected boolean retainSourceFilesUsedForSRGeneration

savedImagesFolder

protected File savedImagesFolder

sleepTimeBetweenPassesToProcessReceivedFiles

protected static int sleepTimeBetweenPassesToProcessReceivedFiles

sleepTimeBetweenPassesToQueryRemoteAEs

protected static int sleepTimeBetweenPassesToQueryRemoteAEs

sopClassUIDColumnName

protected String sopClassUIDColumnName

sourceApplicationEntityTitleColumnName

protected String sourceApplicationEntityTitleColumnName

storedFilePathStrategy

protected StoredFilePathStrategy storedFilePathStrategy

studyHasBeenProcessedColumnName

protected String studyHasBeenProcessedColumnName

studyInstanceUIDColumnName

protected String studyInstanceUIDColumnName

Constructor Detail

DoseReporterWithLegacyOCRAndAutoSendToRegistry

public DoseReporterWithLegacyOCRAndAutoSendToRegistry(String propertiesFileName)
                                               throws DicomException,
                                                      DicomNetworkException,
                                                      IOException,
                                                      InterruptedException,
                                                      FTPException

Wait for incoming dose screen images and SRs and send to registry.

Parameters:

propertiesFileName -

Throws:

DicomException

DicomNetworkException

IOException

InterruptedException

FTPException

Method Detail

alreadyHaveIt

protected boolean alreadyHaveIt(AttributeList uniqueKeys)
                         throws DicomException

Throws:

DicomException

deidentifyFile

protected String deidentifyFile(String dicomFileName)
                         throws DicomException,
                                IOException

Throws:

DicomException

IOException

deleteFilesAndDatabaseRecords

protected void deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
                                      throws DicomException,
                                             IOException

Throws:

DicomException

IOException

deleteFilesAndSetDatabaseRecordsToReferenced

protected void deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfFiles)
                                                     throws DicomException,
                                                            IOException

Throws:

DicomException

IOException

findCandidateFilesToSendToRegistry

protected long findCandidateFilesToSendToRegistry(InformationEntity ie,
                                                  String localPrimaryKeyValue,
                                                  Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfOriginalSRFiles,
                                                  Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfLegacyOCRSRFiles,
                                                  Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfDoseScreenFiles,
                                                  long mostRecentInsertionTime)
                                           throws DicomException

Throws:

DicomException

findSuitableSRFilesAndSendThemToRegistry

protected boolean findSuitableSRFilesAndSendThemToRegistry(String studyLocalPrimaryKeyValue)
                                                    throws DicomException,
                                                           IOException,
                                                           NoSuchAlgorithmException,
                                                           Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

getBuildDate

protected String getBuildDate()

Get the date the package was built.

Returns:

the build date

loadProperties

protected void loadProperties(String propertiesFileName)
                       throws IOException

Load properties.

Throws:

IOException - thrown if properties file is missing

main

public static void main(String[] arg)

Wait for incoming dose screen images and SRs and send to registry.

Parameters:

arg - none

makeSRFileAndSendFileToRegistry

protected void makeSRFileAndSendFileToRegistry(CTDose ctDose)

sendFilesToRegistry

protected void sendFilesToRegistry(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile> setOfSRFiles)
                            throws DicomException,
                                   IOException,
                                   NoSuchAlgorithmException,
                                   Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

sendFileToRegistry

protected void sendFileToRegistry(DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile candidateFile)
                           throws DicomException,
                                  IOException,
                                  NoSuchAlgorithmException,
                                  Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

sendFileToRegistry

protected void sendFileToRegistry(String fileName)
                           throws DicomException,
                                  IOException,
                                  NoSuchAlgorithmException,
                                  Exception

Throws:

DicomException

IOException

NoSuchAlgorithmException

Exception

setSelectedDatabaseRecordHasBeenSentToRegistry

protected void setSelectedDatabaseRecordHasBeenSentToRegistry(String filename)
                                                       throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsExposureDoseSequence

protected void setSelectedDatabaseRecordIsExposureDoseSequence(String filename)
                                                        throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsRadiationDoseScreen

protected void setSelectedDatabaseRecordIsRadiationDoseScreen(String filename)
                                                       throws DicomException

Throws:

DicomException

setSelectedDatabaseRecordIsRadiationDoseSR

protected void setSelectedDatabaseRecordIsRadiationDoseSR(String filename)
                                                   throws DicomException

Throws:

DicomException