Skip navigation links
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 

A

ABBREVPHOTO - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
abort() - Method in class com.pixelmed.network.Association
Send an A-ABORT-RQ.
absoluteRange - Variable in class com.pixelmed.dose.ScanRange
 
absoluteRangeAsDouble - Variable in class com.pixelmed.dose.ScanRange
 
AbstractSyntaxSelectionPolicy - Interface in com.pixelmed.network
Implementations of this interface accept or reject Presentation Contexts from a list based on their Abstract Syntax.
abstractSyntaxSelectionPolicy - Variable in class com.pixelmed.network.AnyExplicitStoreFindMoveGetPresentationContextSelectionPolicy
 
abstractSyntaxSelectionPolicy - Variable in class com.pixelmed.network.AnyExplicitStorePresentationContextSelectionPolicy
 
abstractSyntaxSelectionPolicy - Variable in class com.pixelmed.network.UnencapsulatedExplicitStoreFindMoveGetPresentationContextSelectionPolicy
 
abstractSyntaxSelectionPolicy - Variable in class com.pixelmed.network.UnencapsulatedExplicitStorePresentationContextSelectionPolicy
 
accept(File) - Method in class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom.OnlyDirectoriesFileFilter
 
accept(File, String) - Method in class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom.OnlySuffixFilenameFilter
 
accept(File, String) - Method in class com.pixelmed.utils.FilenameFilterByCaseInsensitiveSuffix
 
acceptAnyTransferSyntaxCheckBox - Variable in class com.pixelmed.display.DicomCleaner
 
acceptAnyTransferSyntaxLabelText - Static variable in class com.pixelmed.test.TestCleanerReceiveAndClean
 
acceptorMaximumLengthReceivedField - Variable in class com.pixelmed.network.NetworkApplicationConfigurationDialog
 
acceptorSocketReceiveBufferSizeField - Variable in class com.pixelmed.network.NetworkApplicationConfigurationDialog
 
acceptorSocketSendBufferSizeField - Variable in class com.pixelmed.network.NetworkApplicationConfigurationDialog
 
AccessionNumber - Static variable in class com.pixelmed.dicom.TagFromName
 
accessionNumberCounter - Static variable in class com.pixelmed.apps.MultiModalitySimulator
 
AcquisitionContextSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionContextSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
AcquisitionContrast - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionDate - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionDateTime - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionDuration - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionNumber - Static variable in class com.pixelmed.dicom.TagFromName
 
acquisitionParameters - Variable in class com.pixelmed.dose.CTDoseAcquisition
 
acquisitionProtocol - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
acquisitions - Variable in class com.pixelmed.dose.CTDose
 
AcquisitionTime - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionTimeSynchronized - Static variable in class com.pixelmed.dicom.TagFromName
 
AcquisitionType - Static variable in class com.pixelmed.dicom.TagFromName
 
ACR - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.ConfigureActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.ImportActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.LogActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.MakeSRActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.PurgeActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.QueryActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.RegistryActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.ReportActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.RetrieveActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.SendActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.ValidateActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DoseUtility.ViewActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.ConfigureActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.ExportActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.FtpSendActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.ImportActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.LogActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.PurgeActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.QueryActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.RetrieveActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.SendActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.apps.DownloadOrTransmit.ViewActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DialogMessageLogger.ClearActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.BlackoutActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.CancelActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.CleanActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.ConfigureActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.DefaultReplacementActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.DefaultYearActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.EarliestYearActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.ExportActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.ImportActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.LogActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.PurgeActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.QueryActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.RandomReplacementActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.RandomYearActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.RetrieveActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomCleaner.SendActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageBlackout.ApplyActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageBlackout.ApplySaveAllActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageBlackout.CancelActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageBlackout.NextActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageBlackout.PreviousActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageBlackout.SaveActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.display.DicomImageViewer.ImportFromSelectionToDatabaseActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.AddRemoteHostActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.DoneActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.EditRemoteHostActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.RemoveRemoteHostActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.network.NetworkApplicationConfigurationDialog.AddRemoteAEActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.network.NetworkApplicationConfigurationDialog.DoneActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.network.NetworkApplicationConfigurationDialog.EditRemoteAEActionListener
 
actionPerformed(ActionEvent) - Method in class com.pixelmed.network.NetworkApplicationConfigurationDialog.RemoveRemoteAEActionListener
 
activateDiscovery(int) - Method in class com.pixelmed.network.NetworkApplicationProperties.OurNetworkConfigurationSource
 
activateDiscovery(int) - Method in class com.pixelmed.network.NetworkConfigurationFromLDAP
 
activateDiscovery(int) - Method in class com.pixelmed.network.NetworkConfigurationFromMulticastDNS
Start DNS Self-Discovery, if possible.
activateDiscovery() - Method in class com.pixelmed.network.NetworkConfigurationSource
Start discovery of network configuration, if possible.
activateDiscovery(int) - Method in class com.pixelmed.network.NetworkConfigurationSource
Start discovery of network configuration, if possible.
activateDumper() - Method in class com.pixelmed.network.NetworkConfigurationSource
Start dumping current configuration information at regular intervals.
activateDumper(int) - Method in class com.pixelmed.network.NetworkConfigurationSource
Start dumping current configuration information at specified intervals.
activateStorageSCP() - Method in class com.pixelmed.apps.DoseUtility
Start DICOM storage listener for populating source database.
activateStorageSCP() - Method in class com.pixelmed.apps.DownloadOrTransmit
Start DICOM storage listener for populating source database.
activateStorageSCP() - Method in class com.pixelmed.apps.InstanceReceiver
Start or restart DICOM storage listener.
activateStorageSCP() - Method in class com.pixelmed.apps.StudyReceiver
Start or restart DICOM storage listener.
activateStorageSCP() - Method in class com.pixelmed.display.DicomCleaner
Start DICOM storage listener for populating source database.
activateTemporaryDatabases() - Method in class com.pixelmed.apps.DoseUtility
Start local database.
activateTemporaryDatabases() - Method in class com.pixelmed.apps.DownloadOrTransmit
Start local database.
activateTemporaryDatabases() - Method in class com.pixelmed.display.DicomCleaner
Start two databases, one for the "source" instances and one for the "target" instances.
ACTIVEAREA - Static variable in class com.pixelmed.convert.TIFFTags
 
activeSuperimposedImagesAppliedToUnderlyingImage - Variable in class com.pixelmed.display.SingleImagePanel
 
ActualFrameDuration - Static variable in class com.pixelmed.dicom.TagFromName
 
actuallyPaintComponent(Graphics, BufferedImage, Rectangle, Rectangle) - Method in class com.pixelmed.display.PlotGraph
Draw the data onto the supplied graphic with the specified background.
add(String) - Method in class com.pixelmed.dicom.SetOfDicomFiles
Add a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
add(File) - Method in class com.pixelmed.dicom.SetOfDicomFiles
Add a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
add(String, boolean) - Method in class com.pixelmed.dicom.SetOfDicomFiles
Add a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
add(String, boolean, boolean) - Method in class com.pixelmed.dicom.SetOfDicomFiles
Add a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
add(String, String, String, String) - Method in class com.pixelmed.dicom.SetOfDicomFiles
Add a DICOM file with the specified attributes.
add(String) - Method in class com.pixelmed.display.IconListBrowser
Add an annotated icon of a DICOM image.
add(String) - Method in class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
add(File) - Method in class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
add(String, FTPRemoteHost) - Method in class com.pixelmed.ftp.FTPRemoteHostInformation
Add a new host.
add(String, String, String, String, String, FTPSecurityType) - Method in class com.pixelmed.ftp.FTPRemoteHostInformation
Add a new remote FTP host.
add(String, ApplicationEntity) - Method in class com.pixelmed.network.NetworkApplicationInformation
Add a new AE.
add(String, String, String, int, String, String) - Method in class com.pixelmed.network.NetworkApplicationInformation
Add a new AE.
ADD_AS_NO_IF_CHANGED - Static variable in class com.pixelmed.display.DicomImageBlackout.BurnedInAnnotationFlagAction
Always remove the Burned in Annotation attribute when the file is saved, only replacing it and using a value of NO when regions have been blacked out.
ADD_AS_NO_IF_SAVED - Static variable in class com.pixelmed.display.DicomImageBlackout.BurnedInAnnotationFlagAction
Always remove the Burned in Annotation attribute when the file is saved, always replacing it with a value of NO, regardless of whether when regions have been blacked out, such as when visual inspection confirms that there is no burned in annotation.
addAcquisition(CTDoseAcquisition) - Method in class com.pixelmed.dose.CTDose
 
addAdditionalKeyStrokeActions() - Method in class com.pixelmed.utils.JTreeWithAdditionalKeyStrokeActions
 
addAgeDerivedFromBirthDateAndStudyRelatedDate(AttributeList) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the Patient's Age derived from the Patient's Birth Date and study-related date.
addAll(Properties) - Method in class com.pixelmed.network.NetworkApplicationInformation
Extract the DICOM network properties from the supplied properties.
addAll(NetworkApplicationInformation) - Method in class com.pixelmed.network.NetworkApplicationInformation
Add all the entries in the supplied map except any that are already present.
addAllAcceptableAttributesToSetAndValuesToMap(TreeSet, AttributeList, HashMap, String) - Method in class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Extract from the attribute list all the attributes and values to be included in the table model.
addAllAcceptableAttributesToSetAndValuesToMap(TreeSet, AttributeList, HashMap) - Method in class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Extract from the attribute list all the attributes and values to be included in the table model.
addAllAcceptableAttributesWithinSequenceAttributesToSetAndValuesToMap(TreeSet, AttributeList, HashMap) - Method in class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Extract from the attribute list all attributes within sequence attributes, and their values to be included in the table model.
addAllAcceptableAttributesWithinSequenceAttributesToSetAndValuesToMapForAllFrames(TreeSet, SequenceAttribute, HashMap) - Method in class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Extract from the Per-frame Functional Groups Sequence all attributes within frame items and their values to be included in the table model.
addAppropriateSegmentedPropertyCategoryCodeSequence(AttributeList, IndexedLabelMapToSegmentation.LabelInformation) - Method in class com.pixelmed.convert.IndexedLabelMapToSegmentation
 
addAttributeListFromDicomFileToDirectory(AttributeList, String) - Method in class com.pixelmed.dicom.DicomDirectory
Add an instance described by a list of attributes to this directory.
addChild(DatabaseTreeRecord) - Method in class com.pixelmed.database.DatabaseTreeRecord
Add a child to this nodes sorted collection of children.
addChild(AttributeTreeRecord) - Method in class com.pixelmed.dicom.AttributeTreeRecord
Add a child node to the current node, keeping the children sorted.
addChild(ContentItem) - Method in class com.pixelmed.dicom.ContentItem
Add a child to this content item.
addChild(DicomDirectoryRecord) - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
addChild(QueryTreeRecord) - Method in class com.pixelmed.query.QueryTreeRecord
Add a child to this nodes sorted collection of children.
addClinicalTrialsAttributes(AttributeList, boolean, String, String, String, String, String, String, String, String, String, String) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the attributes of the Clinical Trials Patient, Study and Series Modules, to a list of attributes.
addContributingEquipmentCheckBox - Variable in class com.pixelmed.display.DicomCleaner
 
addContributingEquipmentLabelText - Static variable in class com.pixelmed.test.TestCleanerReceiveAndClean
 
addContributingEquipmentSequence(AttributeList, String, String, String, String, String, String, String, String) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the attributes of the Contributing Equipment Sequence to a list of attributes.
addContributingEquipmentSequence(AttributeList, boolean, CodedSequenceItem, String, String, String, String, String, String, String, String, String) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the attributes of the Contributing Equipment Sequence to a list of attributes.
addContributingEquipmentSequence(AttributeList, boolean, CodedSequenceItem, String, String, String, String, String, String, String, String, String, String) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the attributes of the Contributing Equipment Sequence to a list of attributes.
addContributingEquipmentSequence(AttributeList, boolean, CodedSequenceItem, String, String, String, String, String, String, String, String, String, String, String[], PersonIdentification[]) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the attributes of the Contributing Equipment Sequence to a list of attributes.
addContributingEquipmentSequence(AttributeList, boolean, CodedSequenceItem, String, String, String, CodedSequenceItem, String, String, String, String, String, String, String, String[], PersonIdentification[]) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Add the attributes of the Contributing Equipment Sequence to a list of attributes.
addContributingEquipmentSequence(AttributeList) - Method in class com.pixelmed.dicom.ImageLibrary
 
addDiagonalCross(Vector, int, int, int, int) - Static method in class com.pixelmed.display.DrawingUtilities
Draw a diagonal cross at a specified location with a gap around the center
addDicomAttributeFromXmlAttribute(AttributeList, AttributeTag, String, NamedNodeMap, int, String) - Method in class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom
 
addDicomDirectoryCheckBox - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
addDicomDirectoryLabelText - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
addDicomDirectoryToolTipText - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
addDicomFiles(String[]) - Method in class com.pixelmed.display.IconListBrowser
Add a set of DICOM image files.
addFileMetaInformation(AttributeList, String, String, String, String) - Static method in class com.pixelmed.dicom.FileMetaInformation
Add the file meta information attributes to an existing list, using only the parameters supplied.
addFileMetaInformation(AttributeList, String, String) - Static method in class com.pixelmed.dicom.FileMetaInformation
Add the file meta information attributes to an existing list, extracting the known UIDs from that list, and adding the additional parameters supplied.
addFileToDelete(String) - Static method in class com.pixelmed.utils.FileReaper
 
addFrame(Attribute) - Method in class com.pixelmed.dicom.MultiFramePixelData
 
AddHierarchicalEvidenceSequencetoStructuredReports - Class in com.pixelmed.apps
A class to process multiple SR files and their referenced instances (like Images, Presentation States and Segmentations) and build Hierarchical SOP Instance Reference Macros with which to (re-)populate CurrentRequestedProcedureEvidenceSequence.
AddHierarchicalEvidenceSequencetoStructuredReports(String[], String) - Constructor for class com.pixelmed.apps.AddHierarchicalEvidenceSequencetoStructuredReports
Copy only the most recent SR files and their references.
AddHierarchicalEvidenceSequencetoStructuredReports.OurMediaImporter - Class in com.pixelmed.apps
 
addImage(AttributeList) - Method in class com.pixelmed.dicom.ImageLibrary
Create and add an SR Image Library entry derived from a DICOM image instance.
addItem(SequenceItem) - Method in class com.pixelmed.dicom.SequenceAttribute
Add an item to the sequence (after any existing items).
addItem(AttributeList) - Method in class com.pixelmed.dicom.SequenceAttribute
Add an item to the sequence (after any existing items).
addItem(AttributeList, long) - Method in class com.pixelmed.dicom.SequenceAttribute
Add an item to the sequence (after any existing items), keeping tracking of input byte offsets.
additionalIndexMapOfColumnsToTables - Variable in class com.pixelmed.database.DatabaseInformationModel
 
AdditionalPatientHistory - Static variable in class com.pixelmed.dicom.TagFromName
 
addLayoutComponent(String, Component) - Method in class com.pixelmed.display.DicomImageBlackout.CenterMaximumAfterInitialSizeLayout
 
addListener(Listener) - Method in class com.pixelmed.event.ApplicationEventDispatcher
 
addListener(Listener) - Method in interface com.pixelmed.event.EventDispatcher
 
addNodeOfDecimalAndHex(SCPTreeRecord, String, int) - Static method in class com.pixelmed.scpecg.Section
Add a tree node with a numeric value as decimal and hexadecimal strings.
addNodeOfDecimalWithMissingValues(SCPTreeRecord, String, int) - Static method in class com.pixelmed.scpecg.Section
Add a tree node with a numeric value as decimal string, with potentially missing values.
addNodeOfDecimalWithUndefinedOrMissingValues(SCPTreeRecord, String, int) - Static method in class com.pixelmed.scpecg.Section7
Add a tree node with a numeric value as decimal string, with potentially udnefined or missing values.
addOrReplaceIfNotEmptyOtherwiseLeaveUnchanged(AttributeList, AttributeTag) - Method in class com.pixelmed.dicom.CompositeInstanceContext
 
addPublicStorageSCPs() - Method in class com.pixelmed.network.NetworkApplicationInformation
 
AddRemoteAEActionListener() - Constructor for class com.pixelmed.network.NetworkApplicationConfigurationDialog.AddRemoteAEActionListener
 
AddRemoteHostActionListener() - Constructor for class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.AddRemoteHostActionListener
 
addSectionHeaderToTree(SCPTreeRecord) - Method in class com.pixelmed.scpecg.Section
Get section header information to the section node in a tree for display.
addSegmentSequence(AttributeList, Set<Integer>, Map<Integer, IndexedLabelMapToSegmentation.LabelInformation>, Set<Integer>) - Method in class com.pixelmed.convert.IndexedLabelMapToSegmentation
 
addSegmentSequenceItem(int, SequenceAttribute, int, IndexedLabelMapToSegmentation.LabelInformation) - Method in class com.pixelmed.convert.IndexedLabelMapToSegmentation
 
addSegmentSequenceItem(int, SequenceAttribute, IndexedLabelMapToSegmentation.LabelInformation) - Method in class com.pixelmed.convert.IndexedLabelMapToSegmentation
 
addSibling(DatabaseTreeRecord) - Method in class com.pixelmed.database.DatabaseTreeRecord
Add a sibling to this node, that is add a child to this node's parent's sorted collection of children.
addSibling(AttributeTreeRecord) - Method in class com.pixelmed.dicom.AttributeTreeRecord
Add a sibling to the current node, keeping the children sorted.
addSibling(ContentItem) - Method in class com.pixelmed.dicom.ContentItem
Add a sibling to this content item (a child to the parent of this content item).
addSibling(DicomDirectoryRecord) - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
addSibling(QueryTreeRecord) - Method in class com.pixelmed.query.QueryTreeRecord
Add a sibling to this node, that is add a child to this node's parent's sorted collection of children.
addSingleImagePanelToMultiPanelAndEstablishLayout() - Method in class com.pixelmed.display.DicomImageBlackout
 
addSingleImagePanelToMultiPanelAndEstablishLayoutWithCenterMaximumAfterInitialSizeLayout() - Method in class com.pixelmed.display.DicomImageBlackout
 
addSource(NetworkConfigurationSource) - Method in class com.pixelmed.network.NetworkApplicationInformationFederated
Add a new source of network information.
addStack(AttributeList, Map<String, StackOfSlices>) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
 
addStackIfNotAlreadyPresent(AttributeList, Map<String, StackOfSlices>) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
 
addToGroups(AttributeList) - Method in class com.pixelmed.apps.MergeCompositeContext
 
addToHierarchicalReferencesToSOPInstances(AttributeList, Map<String, HierarchicalSOPInstanceReference>) - Static method in class com.pixelmed.dicom.HierarchicalSOPInstanceReference
Find hierarchical references to instances that may be referenced anywhere in any dataset regardless of depth of nesting.
addTransferSyntaxUID(String) - Method in class com.pixelmed.network.PresentationContext
 
addTreeModelListener(TreeModelListener) - Method in class com.pixelmed.database.DatabaseTreeModel
 
addTreeModelListener(TreeModelListener) - Method in class com.pixelmed.dicom.AttributeTree
 
addTreeModelListener(TreeModelListener) - Method in class com.pixelmed.dicom.DicomDirectory
 
addTreeModelListener(TreeModelListener) - Method in class com.pixelmed.dicom.StructuredReport
 
addTreeModelListener(TreeModelListener) - Method in class com.pixelmed.query.QueryTreeModel
 
addTreeModelListener(TreeModelListener) - Method in class com.pixelmed.scpecg.SCPTree
 
addType1LongStringAttribute(AttributeList, AttributeTag, String, SpecificCharacterSet) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
addType2LongStringAttribute(AttributeList, AttributeTag, String, SpecificCharacterSet) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
addType3DateTimeAttribute(AttributeList, AttributeTag, String) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
addType3LongStringAttribute(AttributeList, AttributeTag, String, SpecificCharacterSet) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
addType3ShortStringAttribute(AttributeList, AttributeTag, String, SpecificCharacterSet) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
addType3ShortTextAttribute(AttributeList, AttributeTag, String, SpecificCharacterSet) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
addValue(String) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) String value after any existing values of this attribute.
addValue(byte) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) byte value after any existing values of this attribute.
addValue(short) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) short value after any existing values of this attribute.
addValue(int) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) int value after any existing values of this attribute.
addValue(long) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) long value after any existing values of this attribute.
addValue(float) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) float value after any existing values of this attribute.
addValue(double) - Method in class com.pixelmed.dicom.Attribute
Add a(nother) double value after any existing values of this attribute.
addValue(int, int) - Method in class com.pixelmed.dicom.AttributeTagAttribute
 
addValue(AttributeTag) - Method in class com.pixelmed.dicom.AttributeTagAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.AttributeTagAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.DecimalStringAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.DecimalStringAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.DecimalStringAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.FloatDoubleAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.FloatDoubleAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.FloatDoubleAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.FloatDoubleAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.FloatDoubleAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.FloatDoubleAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.FloatSingleAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.FloatSingleAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.FloatSingleAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.FloatSingleAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.FloatSingleAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.FloatSingleAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.IntegerStringAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.IntegerStringAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.IntegerStringAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.SignedLongAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.SignedLongAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.SignedLongAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.SignedLongAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.SignedLongAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.SignedLongAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.SignedShortAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.SignedShortAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.SignedShortAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.SignedShortAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.SignedShortAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.SignedShortAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.SignedVeryLongAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.SignedVeryLongAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.SignedVeryLongAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.SignedVeryLongAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.SignedVeryLongAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.SignedVeryLongAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(byte) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.StringAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.TextAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.UnsignedLongAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.UnsignedLongAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.UnsignedLongAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.UnsignedLongAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.UnsignedLongAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.UnsignedLongAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.UnsignedShortAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.UnsignedShortAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.UnsignedShortAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.UnsignedShortAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.UnsignedShortAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.UnsignedShortAttribute
 
addValue(short) - Method in class com.pixelmed.dicom.UnsignedVeryLongAttribute
 
addValue(int) - Method in class com.pixelmed.dicom.UnsignedVeryLongAttribute
 
addValue(long) - Method in class com.pixelmed.dicom.UnsignedVeryLongAttribute
 
addValue(float) - Method in class com.pixelmed.dicom.UnsignedVeryLongAttribute
 
addValue(double) - Method in class com.pixelmed.dicom.UnsignedVeryLongAttribute
 
addValue(String) - Method in class com.pixelmed.dicom.UnsignedVeryLongAttribute
 
addVerticalCross(Vector, int, int, int, int) - Static method in class com.pixelmed.display.DrawingUtilities
Draw a vertical cross at a specified location with a gap around the center
AdmissionID - Static variable in class com.pixelmed.dicom.TagFromName
 
AdmittingDiagnosesCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
AdmittingDiagnosesDescription - Static variable in class com.pixelmed.dicom.TagFromName
 
AdvancedBlendingPresentationStateStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
AE - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
AETGenerator(String, int) - Constructor for class com.pixelmed.network.ProbeCapability.AETGenerator
 
AffectedSOPClassUID - Static variable in class com.pixelmed.dicom.TagFromName
 
AffectedSOPInstanceUID - Static variable in class com.pixelmed.dicom.TagFromName
 
ageDerived - Variable in class com.pixelmed.test.TestPatientAgeWhenRemoveIdentifyingAttributes
 
ageEncoded - Variable in class com.pixelmed.test.TestPatientAgeWhenRemoveIdentifyingAttributes
 
AgeStringAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Age String (AS) attributes.
AgeStringAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.AgeStringAttribute
Construct an (empty) attribute.
AgeStringAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.AgeStringAttribute
Read an attribute from an input stream.
AgeStringAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.AgeStringAttribute
Read an attribute from an input stream.
ALERT - Static variable in class com.pixelmed.utils.Syslog
 
alertAccumulatedCTDIvolForwardEstimate - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertAccumulatedDLPForwardEstimate - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertCTDIvolValue - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertCTDIvolValueConfigured - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertDLPValue - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertDLPValueConfigured - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertPerson - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
alertReasonForProceeding - Variable in class com.pixelmed.dose.CTDoseCheckDetails
 
ALL_ANNOTATIONS - Static variable in class com.pixelmed.display.ConsumerFormatImageMaker
 
allAttributesReturnedInIdentifier - Variable in class com.pixelmed.query.QueryTreeRecord
 
allframes - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleCompressedFrames
 
allOptionalKeysSuppliedWereSupported() - Method in interface com.pixelmed.query.QueryResponseGenerator
Determine information needed to qualify pending response statuses.
allowData - Variable in class com.pixelmed.network.CompositeResponseHandler
 
allowDeferredReadFromFileIfNotMemoryMapped - Static variable in class com.pixelmed.display.SourceImage
 
allowMemoryMapping - Static variable in class com.pixelmed.display.SourceImage
 
allowMemoryMappingFromMultiplePerFrameFiles - Static variable in class com.pixelmed.display.SourceImage
 
allowRepairOfIncorrectLength() - Method in class com.pixelmed.dicom.CodeStringAttribute
 
allowRepairOfIncorrectLength() - Method in class com.pixelmed.dicom.DateAttribute
 
allowRepairOfIncorrectLength() - Method in class com.pixelmed.dicom.DateTimeAttribute
 
allowRepairOfIncorrectLength() - Method in class com.pixelmed.dicom.StringAttribute
 
allowRepairOfIncorrectLength() - Method in class com.pixelmed.dicom.TimeAttribute
 
allowRepairOfInvalidCharacterReplacement() - Method in class com.pixelmed.dicom.CodeStringAttribute
 
allowRepairOfInvalidCharacterReplacement() - Method in class com.pixelmed.dicom.DateAttribute
 
allowRepairOfInvalidCharacterReplacement() - Method in class com.pixelmed.dicom.DateTimeAttribute
 
allowRepairOfInvalidCharacterReplacement() - Method in class com.pixelmed.dicom.StringAttribute
 
allowRepairOfInvalidCharacterReplacement() - Method in class com.pixelmed.dicom.TimeAttribute
 
alreadyHaveIt(AttributeList) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
alternateContentDescription - Variable in class com.pixelmed.dicom.ColorPalette
 
AlternateContentDescriptionSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
alternateContentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
alternateContentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
alternateContentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
alternateContentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
alternateContentLanguageCodeMeaning - Variable in class com.pixelmed.dicom.ColorPalette
 
alternateContentLanguageCodeMeaningStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
alternateContentLanguageCodeMeaningStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
alternateContentLanguageCodeMeaningStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
alternateContentLanguageCodeMeaningStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
alternateContentLanguageCodeValue - Variable in class com.pixelmed.dicom.ColorPalette
 
alternateContentLanguageCodeValueStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
alternateContentLanguageCodeValueStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
alternateContentLanguageCodeValueStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
alternateContentLanguageCodeValueStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
AlternateRepresentationSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ALWAYS_REMOVE - Static variable in class com.pixelmed.display.DicomImageBlackout.BurnedInAnnotationFlagAction
Always remove the Burned in Annotation attribute when the file is saved, without replacing it.
AmbulatoryECGStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
amplitudeScalingFactorInMilliVolts - Variable in class com.pixelmed.displaywave.SourceECG
 
ANALOGBALANCE - Static variable in class com.pixelmed.convert.TIFFTags
 
AnalyzeException - Exception in com.pixelmed.convert
 
AnalyzeException(String) - Constructor for exception com.pixelmed.convert.AnalyzeException
 
AnalyzeHeader - Class in com.pixelmed.convert
A class for extracting Analyze image input format headers.
AnalyzeHeader(File) - Constructor for class com.pixelmed.convert.AnalyzeHeader
 
AnalyzeToDicom - Class in com.pixelmed.convert
A class for converting Analyze image input format files into images of a specified or appropriate SOP Class.
AnalyzeToDicom(String, String, String, String, String, String, String) - Constructor for class com.pixelmed.convert.AnalyzeToDicom
Read an Analyze image input format files and create an image of a specified or appropriate SOP Class.
AnalyzeToDicom(String, String, String, String, String, String, String, String, String) - Constructor for class com.pixelmed.convert.AnalyzeToDicom
Read an Analyze image input format files and create an image of a specified or appropriate SOP Class.
AnatomicalOrientationType - Static variable in class com.pixelmed.dicom.TagFromName
 
anatomicalStructure - Variable in class com.pixelmed.dicom.ProjectionXRayImageLibrary.ProjectionXRayImageLibraryEntry
 
anatomicConceptEntries - Static variable in class com.pixelmed.anatproc.CTAnatomy
 
anatomicConceptEntries - Static variable in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
AnatomicRegionModifierSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
AnatomicRegionSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
anatomy - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
anatomyConcepts - Static variable in class com.pixelmed.anatproc.CTAnatomy
 
anatomyConcepts - Static variable in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
ANTIALIASSTRENGTH - Static variable in class com.pixelmed.convert.TIFFTags
 
AnyExplicitStoreFindMoveGetPresentationContextSelectionPolicy - Class in com.pixelmed.network
Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes with any explicit transfer syntax (whether compressed or not), also rejecting implicit VR transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
AnyExplicitStoreFindMoveGetPresentationContextSelectionPolicy() - Constructor for class com.pixelmed.network.AnyExplicitStoreFindMoveGetPresentationContextSelectionPolicy
 
AnyExplicitStorePresentationContextSelectionPolicy - Class in com.pixelmed.network
Accept only SOP Classes for storage of composite instances and verification SOP Classes with any explicit transfer syntax (whether compressed or not), also rejecting implicit VR transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
AnyExplicitStorePresentationContextSelectionPolicy() - Constructor for class com.pixelmed.network.AnyExplicitStorePresentationContextSelectionPolicy
 
AnyExplicitTransferSyntaxSelectionPolicy - Class in com.pixelmed.network
Accept any explicit transfer syntax (whether compressed or not), also rejecting implicit VR transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.
AnyExplicitTransferSyntaxSelectionPolicy() - Constructor for class com.pixelmed.network.AnyExplicitTransferSyntaxSelectionPolicy
 
appendExactOrIsNullMatch(StringBuffer, String) - Static method in class com.pixelmed.database.DatabaseInformationModel
Append a check for a match against a string value, accounting for the need to use the "IS NULL" rather than "=" expression when wanting to explciitly have NULL match NULL rather to never match.
apple.dts.samplecode.osxadapter - package apple.dts.samplecode.osxadapter
 
application - Variable in class com.pixelmed.test.TestCleanerReceiveAndClean
 
ApplicationEntity - Class in com.pixelmed.network
This class provides a description of the parameters of a known Application Entity.
ApplicationEntity(ApplicationEntity) - Constructor for class com.pixelmed.network.ApplicationEntity
 
ApplicationEntity(String) - Constructor for class com.pixelmed.network.ApplicationEntity
 
ApplicationEntity(String, PresentationAddress, String, String) - Constructor for class com.pixelmed.network.ApplicationEntity
 
ApplicationEntityAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Application Entity (AE) attributes.
ApplicationEntityAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.ApplicationEntityAttribute
Construct an (empty) attribute.
ApplicationEntityAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.ApplicationEntityAttribute
Read an attribute from an input stream.
ApplicationEntityAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.ApplicationEntityAttribute
Read an attribute from an input stream.
ApplicationEntityConfigurationDialog - Class in com.pixelmed.network
This class implements a dialog for users to enter DICOM AE network configuration parameters.
ApplicationEntityConfigurationDialog(Component, String, ApplicationEntity) - Constructor for class com.pixelmed.network.ApplicationEntityConfigurationDialog
Configure AE information.
ApplicationEntityConfigurationDialog(String, ApplicationEntity) - Constructor for class com.pixelmed.network.ApplicationEntityConfigurationDialog
Configure AE information.
ApplicationEntityConfigurationDialog(Component, String) - Constructor for class com.pixelmed.network.ApplicationEntityConfigurationDialog
Create new AE information.
ApplicationEntityConfigurationDialog(Component) - Constructor for class com.pixelmed.network.ApplicationEntityConfigurationDialog
Create new AE information.
ApplicationEntityConfigurationDialog() - Constructor for class com.pixelmed.network.ApplicationEntityConfigurationDialog
Create new AE information.
ApplicationEntityMap - Class in com.pixelmed.network
This class provides a list of known Application Entities, indexed by AET.
ApplicationEntityMap() - Constructor for class com.pixelmed.network.ApplicationEntityMap
 
ApplicationEventDispatcher - Class in com.pixelmed.event
 
ApplicationFrame - Class in com.pixelmed.display
This class provides the infrastructure for creating applications (which extend this class) and provides them with utilities for creating a main window with a title and default close and dispose behavior, as well as access to properties, and a window snapshot function.
ApplicationFrame() - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the default size and title and no property source.
ApplicationFrame(int) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the default size and title and no property source.
ApplicationFrame(String) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the default size, specified title and no property source.
ApplicationFrame(String, int) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the default size, specified title and no property source.
ApplicationFrame(String, String) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the default size, and specified title and property sources.
ApplicationFrame(String, String, int) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the default size, and specified title and property sources.
ApplicationFrame(String, String, int, int) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the specified size, title and property sources.
ApplicationFrame(String, String, int, int, int) - Constructor for class com.pixelmed.display.ApplicationFrame
Construct a window with the specified size, title and property sources.
ApplicationStatusChangeEventNotificationHandler() - Constructor for class com.pixelmed.display.DicomCleaner.OurDicomImageBlackout.ApplicationStatusChangeEventNotificationHandler
 
applyAbstractSyntaxSelectionPolicy(LinkedList, int) - Method in interface com.pixelmed.network.AbstractSyntaxSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
applyAbstractSyntaxSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.CompositeInstanceStoreAbstractSyntaxSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
applyAbstractSyntaxSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.CompositeInstanceStoreFindMoveGetAbstractSyntaxSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
applyActionListener - Variable in class com.pixelmed.display.DicomImageBlackout
 
ApplyActionListener(DicomImageBlackout) - Constructor for class com.pixelmed.display.DicomImageBlackout.ApplyActionListener
 
applyExplicitTransferSyntaxPreferencePolicy(LinkedList, int) - Method in class com.pixelmed.network.TransferSyntaxSelectionPolicy
Reject Implicit VR Presentation Contexts when multiple Presentation Contexts are offered for the same Abstract Syntax, if possible.
applyPaddingValueRangeToLUT(byte[], int, int, int) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyPresentationContextSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.AnyExplicitStoreFindMoveGetPresentationContextSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
applyPresentationContextSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.AnyExplicitStorePresentationContextSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
applyPresentationContextSelectionPolicy(LinkedList, int) - Method in interface com.pixelmed.network.PresentationContextSelectionPolicy
Accept or reject Presentation Contexts.
applyPresentationContextSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.UnencapsulatedExplicitStoreFindMoveGetPresentationContextSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
applyPresentationContextSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.UnencapsulatedExplicitStorePresentationContextSelectionPolicy
Accept or reject Abstract Syntaxes (SOP Classes).
ApplySaveAllActionListener(DicomImageBlackout) - Constructor for class com.pixelmed.display.DicomImageBlackout.ApplySaveAllActionListener
 
applyShutter() - Method in class com.pixelmed.display.event.ApplyShutterChangeEvent
 
ApplyShutterChangeEvent - Class in com.pixelmed.display.event
 
ApplyShutterChangeEvent(EventContext, boolean) - Constructor for class com.pixelmed.display.event.ApplyShutterChangeEvent
 
applyTransferSyntaxSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.AnyExplicitTransferSyntaxSelectionPolicy
Accept or reject Presentation Contexts, preferring Explicit over Implicit VR.
applyTransferSyntaxSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.TransferSyntaxSelectionPolicy
Accept or reject Presentation Contexts, based on TransferSyntax.
applyTransferSyntaxSelectionPolicy(LinkedList, int) - Method in class com.pixelmed.network.UnencapsulatedExplicitTransferSyntaxSelectionPolicy
Accept or reject Presentation Contexts, preferring Explicit over Implicit VR.
applyVOILUT(BufferedImage, double, double, double, double, boolean, boolean, double, double, boolean, int, int, int, int, int, short[], int, int, int) - Static method in class com.pixelmed.display.SingleImagePanel
 
applyVOILUT(BufferedImage, double, double, double, double, boolean, boolean, double, double, boolean, int, int, int, int, int, short[], int, int, int) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthLinear(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int) - Static method in class com.pixelmed.display.SingleImagePanel
 
applyWindowCenterAndWidthLinear(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int, boolean) - Static method in class com.pixelmed.display.SingleImagePanel
 
applyWindowCenterAndWidthLinear(BufferedImage, double, double, boolean, boolean, double, double, boolean, int) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthLinear(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthLinear(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int, boolean) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthLinearToColorImage(BufferedImage, double, double) - Static method in class com.pixelmed.display.SingleImagePanel
 
applyWindowCenterAndWidthLinearToColorImage(BufferedImage, double, double) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthLogistic(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int) - Static method in class com.pixelmed.display.SingleImagePanel
 
applyWindowCenterAndWidthLogistic(BufferedImage, double, double, boolean, boolean, double, double, boolean, int) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthLogistic(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthWithPaletteColor(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int, int, int, int, short[], short[], short[]) - Static method in class com.pixelmed.display.SingleImagePanel
 
applyWindowCenterAndWidthWithPaletteColor(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int, int, int, short[], short[], short[]) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
applyWindowCenterAndWidthWithPaletteColor(BufferedImage, double, double, boolean, boolean, double, double, boolean, int, int, int, int, int, short[], short[], short[]) - Static method in class com.pixelmed.display.WindowCenterAndWidth
 
areAllSlicesParallel() - Method in class com.pixelmed.geometry.GeometryOfVolume
Are all the frames in the set of frames parallel ?
areCharactersInValuesValid() - Method in class com.pixelmed.dicom.StringAttribute
 
areDownsampled - Variable in class com.pixelmed.dicom.CompressedFrameDecoder
 
AReleaseException - Exception in com.pixelmed.network
 
AReleaseException(String) - Constructor for exception com.pixelmed.network.AReleaseException
 
areLengthsOfValuesValid() - Method in class com.pixelmed.dicom.StringAttribute
 
areNumberedFromOneByOne - Variable in class com.pixelmed.dicom.CompressedFrameDecoder
 
areParallel - Variable in class com.pixelmed.geometry.GeometryOfVolume
 
areReadingDataSet() - Method in class com.pixelmed.dicom.DicomInputStream
Are we reading the dataset?
areReadingMetaHeader() - Method in class com.pixelmed.dicom.DicomInputStream
Are we reading the meta information header?
areSlicesParallel(GeometryOfSlice, GeometryOfSlice) - Static method in class com.pixelmed.geometry.GeometryOfSlice
Determine if two slices are parallel.
areValuesWellFormed() - Method in class com.pixelmed.dicom.AgeStringAttribute
 
areValuesWellFormed() - Method in class com.pixelmed.dicom.DateAttribute
 
areValuesWellFormed() - Method in class com.pixelmed.dicom.IntegerStringAttribute
 
areValuesWellFormed() - Method in class com.pixelmed.dicom.StringAttribute
 
areValuesWellFormed() - Method in class com.pixelmed.dicom.TimeAttribute
 
areWritingDataSet() - Method in class com.pixelmed.dicom.DicomOutputStream
Are we writing the dataset?
areWritingMetaHeader() - Method in class com.pixelmed.dicom.DicomOutputStream
Are we writing the meta information header?
ArrayCopyUtilities - Class in com.pixelmed.dicom
A class of static methods for copying data between arrays of different types, expanding arrays, and comparing them, and removing padding from strings.
ArrayCopyUtilities() - Constructor for class com.pixelmed.dicom.ArrayCopyUtilities
 
arrayOfQuerySOPClasses - Static variable in class com.pixelmed.dicom.SOPClass
 
arrayOfRetrieveWithGetSOPClasses - Static variable in class com.pixelmed.dicom.SOPClass
 
arrayOfRetrieveWithMoveSOPClasses - Static variable in class com.pixelmed.dicom.SOPClass
 
arrayOfStorageSOPClasses - Static variable in class com.pixelmed.dicom.SOPClass
 
arraysAreEqual(double[], double[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Compare two double arrays and return true if both not null, and are of equal length and contain equal values.
ArterialPulseWaveformStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
ARTIST - Static variable in class com.pixelmed.convert.TIFFTags
 
AS - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
ASCII - Static variable in class com.pixelmed.convert.TIFFTypes
 
ASSHOTICCPROFILE - Static variable in class com.pixelmed.convert.TIFFTags
 
ASSHOTNEUTRAL - Static variable in class com.pixelmed.convert.TIFFTags
 
ASSHOTPREPROFILEMATRIX - Static variable in class com.pixelmed.convert.TIFFTags
 
ASSHOTWHITEXY - Static variable in class com.pixelmed.convert.TIFFTags
 
Association - Class in com.pixelmed.network
 
Association() - Constructor for class com.pixelmed.network.Association
 
AssociationFactory - Class in com.pixelmed.network
A factory object of static methods that can accept and initiate associations.
AssociationFactory() - Constructor for class com.pixelmed.network.AssociationFactory
 
associationNumber - Variable in class com.pixelmed.network.Association
 
AssociationOutputStream - Class in com.pixelmed.network
A specialized java.io.OutputStream which buffers and fragments data which is written to it into PDUs and sends them over the supplied OutputStream which is (presumably) that of the java.net.Socket of an established Association.
AssociationOutputStream(OutputStream, int, int) - Constructor for class com.pixelmed.network.AssociationOutputStream
Construct a PDU buffering OutputStream on top of another OutputStream
associationReleased - Variable in class com.pixelmed.test.TestCMove
 
associationReleased - Variable in class com.pixelmed.test.TestCStore
 
associationReleased - Variable in class com.pixelmed.test.TestCStore_AETs
 
associationReleased - Variable in class com.pixelmed.test.TestCStore_ConvertTransferSyntaxes
 
AssociationStatusHandler - Class in com.pixelmed.network
This abstract class provides a mechanism for detecting when an Association closes.
AssociationStatusHandler() - Constructor for class com.pixelmed.network.AssociationStatusHandler
 
ASTM_SIG - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
AsynchronousOutputStream - Class in com.pixelmed.dicom
A class that extends FilterOutputStream by creating a separate thread to actually perform the output operations, and returning immediately from write calls, but blocking on closing.
AsynchronousOutputStream(OutputStream) - Constructor for class com.pixelmed.dicom.AsynchronousOutputStream
 
AT - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
Attribute - Class in com.pixelmed.dicom
The Attribute class is an abstract class that contains the core functionality for storing, accessing and maintaining values of a DICOM Attribute.
Attribute(AttributeTag) - Constructor for class com.pixelmed.dicom.Attribute
Construct an (empty) attribute; called only by concrete sub-classes.
AttributeFactory - Class in com.pixelmed.dicom
The AttributeFactory class is a factory class of static methods for creating concrete instances of the abstract class Attribute based on their value representation.
attributeFrameTableScrollPane - Variable in class com.pixelmed.display.DicomImageViewer
 
AttributeList - Class in com.pixelmed.dicom
The AttributeList class maintains a list of individual DICOM attributes.
AttributeList() - Constructor for class com.pixelmed.dicom.AttributeList
 
AttributeList.ReadTerminationStrategy - Interface in com.pixelmed.dicom
An interface to supply the criteria for prematurely terminating the reading of a DICOM file.
AttributeListFunctionalGroupsTableModel - Class in com.pixelmed.dicom
The abstract AttributeListFunctionalGroupsTableModel class extends a AttributeListTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table in order to provide support for a AttributeListTableBrowser.
AttributeListFunctionalGroupsTableModel() - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Construct an empty table model.
AttributeListFunctionalGroupsTableModel(AttributeList) - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Construct the table model from an attribute list.
AttributeListFunctionalGroupsTableModel(AttributeList, HashSet, HashSet) - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel
Construct the table model from an attribute list.
AttributeListFunctionalGroupsTableModelAllFrames - Class in com.pixelmed.dicom
The abstract AttributeListFunctionalGroupsTableModelAllFrames class extends a AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a row for each frame in order to provide support for a AttributeListTableBrowser.
AttributeListFunctionalGroupsTableModelAllFrames() - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelAllFrames
Construct an empty table model.
AttributeListFunctionalGroupsTableModelAllFrames(AttributeList) - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelAllFrames
Construct the table model from an attribute list.
AttributeListFunctionalGroupsTableModelAllFrames(AttributeList, HashSet, HashSet) - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelAllFrames
Construct the table model from an attribute list.
AttributeListFunctionalGroupsTableModelOneFrame - Class in com.pixelmed.dicom
The abstract AttributeListFunctionalGroupsTableModelOneFrame class extends a AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a single row for a single frame in order to provide support for a AttributeListTableBrowser.
AttributeListFunctionalGroupsTableModelOneFrame() - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelOneFrame
 
AttributeListFunctionalGroupsTableModelOneFrame(AttributeList) - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelOneFrame
 
AttributeListFunctionalGroupsTableModelOneFrame(AttributeList, HashSet, HashSet) - Constructor for class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelOneFrame
 
AttributeListTableBrowser - Class in com.pixelmed.dicom
The AttributeListTableBrowser class implements a Swing graphical user interface to browse the contents of an AttributeListTableModel.
AttributeListTableBrowser(AttributeListTableModel) - Constructor for class com.pixelmed.dicom.AttributeListTableBrowser
Build and display a graphical user interface view of a table model.
AttributeListTableBrowser(AttributeList) - Constructor for class com.pixelmed.dicom.AttributeListTableBrowser
Build and display a graphical user interface view of a table of attributes.
AttributeListTableBrowser(AttributeList, HashSet<AttributeTag>, HashSet<AttributeTag>) - Constructor for class com.pixelmed.dicom.AttributeListTableBrowser
Build and display a graphical user interface view of a table of attributes.
AttributeListTableModel - Class in com.pixelmed.dicom
The AttributeListTableModel class extends a AbstractTableModel to abstract the contents of a list of attributes as a single row table in order to provide support for a AttributeListTableBrowser.
AttributeListTableModel() - Constructor for class com.pixelmed.dicom.AttributeListTableModel
Construct an empty table model.
AttributeListTableModel(AttributeList) - Constructor for class com.pixelmed.dicom.AttributeListTableModel
Construct the table model from an attribute list.
AttributeListTableModel(AttributeList, HashSet, HashSet) - Constructor for class com.pixelmed.dicom.AttributeListTableModel
Construct the table model from an attribute list.
AttributeModificationDateTime - Static variable in class com.pixelmed.dicom.TagFromName
 
attributeName - Variable in class com.pixelmed.apps.InsertCodeSequence
 
AttributeTag - Class in com.pixelmed.dicom
An individual DICOM data element (attribute) tag that includes a group and element (each a 16 bit unsigned binary).
AttributeTag(int, int) - Constructor for class com.pixelmed.dicom.AttributeTag
Construct a DICOM data element (attribute) tag.
AttributeTag(String) - Constructor for class com.pixelmed.dicom.AttributeTag
Construct a DICOM data element (attribute) tag from its string representation.
AttributeTagAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Attribute Tag (AT) attributes.
AttributeTagAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.AttributeTagAttribute
Construct an (empty) attribute.
AttributeTagAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.AttributeTagAttribute
Read an attribute from an input stream.
AttributeTagAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.AttributeTagAttribute
Read an attribute from an input stream.
AttributeTree - Class in com.pixelmed.dicom
The AttributeTree class implements a TreeModel to abstract the contents of a list of attributes as a tree in order to provide support for a AttributeTreeBrowser.
AttributeTree(AttributeList) - Constructor for class com.pixelmed.dicom.AttributeTree
Construct an entire tree of attributes from an attribute list.
AttributeTreeBrowser - Class in com.pixelmed.dicom
The AttributeTreeBrowser class implements a Swing graphical user interface to browse the contents of an AttributeTree.
AttributeTreeBrowser(AttributeList, JScrollPane) - Constructor for class com.pixelmed.dicom.AttributeTreeBrowser
Build and display a graphical user interface view of a tree of attributes.
AttributeTreeRecord - Class in com.pixelmed.dicom
Instances of the AttributeTreeRecord class represent nodes in a tree of the AttributeTree class, which in turn is used by the AttributeTreeBrowser class.
AttributeTreeRecord(AttributeTreeRecord, Attribute, DicomDictionary) - Constructor for class com.pixelmed.dicom.AttributeTreeRecord
Construct a record for an attribute.
AttributeTreeRecord(AttributeTreeRecord, int) - Constructor for class com.pixelmed.dicom.AttributeTreeRecord
Construct a record for an item of a sequence attribute.
attributeTreeScrollPane - Variable in class com.pixelmed.display.DicomImageViewer
 
AudioSRStorageTrialRetired - Static variable in class com.pixelmed.dicom.SOPClass
 
AUTH - Static variable in class com.pixelmed.utils.Syslog
 
AuthorizationEquipmentCertificationNumber - Static variable in class com.pixelmed.dicom.TagFromName
 
AUTOMATED_DATA_COLLECTION - Static variable in class com.pixelmed.dose.SourceOfDoseInformation
 
AutorefractionMeasurementsStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
aux_file - Variable in class com.pixelmed.convert.AnalyzeHeader
 
aux_file - Variable in class com.pixelmed.convert.NIfTI1Header
 
available() - Method in class com.pixelmed.dicom.CompressedFrameDecoder.ByteArrayInputStreamWithOffsetCounterAndOurMethods
 
available() - Method in class com.pixelmed.transfermonitor.MonitoredInputStream
 
AXIAL - Static variable in class com.pixelmed.dose.CTScanType
 
AXIAL_LABEL - Static variable in class com.pixelmed.dicom.DescriptionFactory
 

B

backgroundIndex - Variable in class com.pixelmed.convert.IndexedLabelMapToSegmentation
 
backgroundLabel - Variable in class com.pixelmed.convert.IndexedLabelMapToSegmentation
 
badAnatomyWords - Static variable in class com.pixelmed.anatproc.CTAnatomy
 
badAnatomyWords - Static variable in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
BADFAXLINES - Static variable in class com.pixelmed.convert.TIFFTags
 
badFieldString - Static variable in class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
 
badLateralityOrViewOrAnatomyPhraseTriggers - Static variable in class com.pixelmed.anatproc.CTAnatomy
 
badLateralityOrViewOrAnatomyPhraseTriggers - Static variable in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
badLateralityWords - Static variable in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
badViewWords - Static variable in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
badWords - Variable in class com.pixelmed.anatproc.DictionaryOfConcepts
 
Base64 - Class in com.pixelmed.utils
Various static methods helpful for converting to and from Base64 representations (e.g., for representing binary values in XML documents).
Base64() - Constructor for class com.pixelmed.utils.Base64
 
baseCode - Variable in class com.pixelmed.scpecg.HuffmanTable
 
BASELINEEXPOSURE - Static variable in class com.pixelmed.convert.TIFFTags
 
BASELINENOISE - Static variable in class com.pixelmed.convert.TIFFTags
 
BASELINESHARPNESS - Static variable in class com.pixelmed.convert.TIFFTags
 
baseValueRepresentedByBaseCode - Variable in class com.pixelmed.scpecg.HuffmanTable
 
BasicStructuredDisplayStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
BasicTextSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
BasicVoiceStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
BAYERGREENSPLIT - Static variable in class com.pixelmed.convert.TIFFTags
 
BESTQUALITYSCALE - Static variable in class com.pixelmed.convert.TIFFTags
 
bigEndian - Variable in class com.pixelmed.convert.AnalyzeHeader
 
bigEndian - Variable in class com.pixelmed.convert.NIfTI1Header
 
bigEndian - Variable in class com.pixelmed.dicom.OtherWordAttributeMultipleFilesOnDisk
 
bigEndian - Variable in class com.pixelmed.dicom.OtherWordAttributeOnDisk
 
bigEndian - Variable in class com.pixelmed.dicom.TransferSyntax
 
bigEndianToUnsignedInt(byte[], int, int) - Static method in class com.pixelmed.utils.ByteArray
Extract an unsigned big endian integer from a byte array.
bigEndianToUnsignedInt(byte[]) - Static method in class com.pixelmed.utils.ByteArray
Extract an unsigned big endian integer from an entire byte array.
BinaryInputStream - Class in com.pixelmed.dicom
A class that extends FilterInputStream by adding the concept of little and big endian binary value encoding, and supplies functions for reading various sized integer and floating point words.
BinaryInputStream(File, boolean) - Constructor for class com.pixelmed.dicom.BinaryInputStream
Construct a byte ordered stream from the supplied file.
BinaryInputStream(InputStream, boolean) - Constructor for class com.pixelmed.dicom.BinaryInputStream
Construct a byte ordered stream from the supplied stream.
BinaryOutputStream - Class in com.pixelmed.dicom
A class that extends FilterOutputStream by adding the concept of little and big endian binary value encoding, and supplies functions for writing various sized integer and floating point words.
BinaryOutputStream(OutputStream, boolean) - Constructor for class com.pixelmed.dicom.BinaryOutputStream
 
bitpix - Variable in class com.pixelmed.convert.AnalyzeHeader
 
bitpix - Variable in class com.pixelmed.convert.NIfTI1Header
 
BitsAllocated - Static variable in class com.pixelmed.dicom.TagFromName
 
BITSPERSAMPLE - Static variable in class com.pixelmed.convert.TIFFTags
 
BitsStored - Static variable in class com.pixelmed.dicom.TagFromName
 
BLACKLEVEL - Static variable in class com.pixelmed.convert.TIFFTags
 
BLACKLEVELDELTAH - Static variable in class com.pixelmed.convert.TIFFTags
 
BLACKLEVELDELTAV - Static variable in class com.pixelmed.convert.TIFFTags
 
BLACKLEVELREPEATDIM - Static variable in class com.pixelmed.convert.TIFFTags
 
blackout(SourceImage, AttributeList, Vector) - Static method in class com.pixelmed.display.ImageEditUtilities
Blackout specified regions in an image, for example to remove burned in identification.
blackout(SourceImage, AttributeList, Vector, boolean) - Static method in class com.pixelmed.display.ImageEditUtilities
Blackout specified regions in an image, for example to remove burned in identification.
blackout(SourceImage, AttributeList, Vector, boolean, boolean, boolean, int) - Static method in class com.pixelmed.display.ImageEditUtilities
Blackout specified regions in an image, for example to remove burned in identification.
BLACKOUT_FAILED - Static variable in class com.pixelmed.display.DicomImageBlackout.StatusNotificationHandler
 
BlackoutActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.BlackoutActionListener
 
blackoutApplyButton - Variable in class com.pixelmed.display.DicomImageBlackout
 
blackoutJPEGBlocks(File, File, Vector) - Static method in class com.pixelmed.display.ImageEditUtilities
Blackout JPEG encoded blocks of specified regions in an image, for example to remove burned in identification.
blackoutNextButton - Variable in class com.pixelmed.display.DicomImageBlackout
 
blackoutPreviousButton - Variable in class com.pixelmed.display.DicomImageBlackout
 
blackoutSaveButton - Variable in class com.pixelmed.display.DicomImageBlackout
 
BlendingSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
BlendingSoftcopyPresentationStateStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
BlockData - Static variable in class com.pixelmed.dicom.TagFromName
 
blue - Variable in class com.pixelmed.dicom.ColorPalette
 
BluePaletteColorLookupTableData - Static variable in class com.pixelmed.dicom.TagFromName
 
BluePaletteColorLookupTableDescriptor - Static variable in class com.pixelmed.dicom.TagFromName
 
blueStaticArray - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
blueStaticArray - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
blueStaticArray - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
blueStaticArray - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
BODY32 - Static variable in class com.pixelmed.dose.CTPhantomType
 
BodyPartExamined - Static variable in class com.pixelmed.dicom.TagFromName
 
BodyPartThickness - Static variable in class com.pixelmed.dicom.TagFromName
 
bottomZLocationOfReconstructableVolume - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
bottomZLocationOfScanningLength - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
BreastProjectionXRayImageStorageForPresentation - Static variable in class com.pixelmed.dicom.SOPClass
 
BreastProjectionXRayImageStorageForProcessing - Static variable in class com.pixelmed.dicom.SOPClass
 
BreastTomosynthesisImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
BreedRegistrationSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
brhcX - Variable in class com.pixelmed.display.DisplayedAreaSelection
 
brhcY - Variable in class com.pixelmed.display.DisplayedAreaSelection
 
BrowserPaneChangeEvent - Class in com.pixelmed.display.event
 
BrowserPaneChangeEvent(EventContext, int) - Constructor for class com.pixelmed.display.event.BrowserPaneChangeEvent
 
buf - Variable in class com.pixelmed.dicom.CompressedFrameDecoder.ByteArrayInputStreamWithOffsetCounterAndOurMethods
 
bufferedImageSource - Variable in class com.pixelmed.display.SourceImage
 
BufferedImageUtilities - Class in com.pixelmed.display
 
BufferedImageUtilities() - Constructor for class com.pixelmed.display.BufferedImageUtilities
 
bufferTypeNames - Static variable in class com.pixelmed.display.BufferedImageUtilities
Indexes correspond to DataBuffer.TYPE_xxx values, except TYPE_UNDEFINED.
buildDate - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
buildDate - Variable in class com.pixelmed.apps.StudyReceiver
 
buildInstanceTitle(SCPECG) - Static method in class com.pixelmed.displaywave.SCPSourceECG
 
buildInstanceTitle() - Static method in class com.pixelmed.displaywave.SourceECG
 
buildInstanceTitleFromAttributeList() - Method in class com.pixelmed.dicom.AttributeList
Construct a text title to describe this list.
buildInstanceTitleFromAttributeList(AttributeList) - Static method in class com.pixelmed.dicom.AttributeList
Construct a text title to describe the specified list.
buildMouseListenerToDetectDoubleClickEvents() - Method in class com.pixelmed.database.DatabaseTreeBrowser
 
buildMouseListenerToDetectDoubleClickEvents() - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
buildPreferredDisplaySequence() - Method in class com.pixelmed.displaywave.SourceECG
Use the default encoded order.
buildPreferredDisplaySequence(String[]) - Method in class com.pixelmed.displaywave.SourceECG
Using the lead descriptions, look for patterns and determine the desired sequential display order, defaulting to the encoded order if no recognized pattern.
buildTreeSelectionListenerToDisplayAttributesOfSelectedRecord(JScrollPane) - Method in class com.pixelmed.database.DatabaseTreeBrowser
By default this method populates the tabular attribute browser when an entity is selected in the tree browser.
buildTreeSelectionListenerToDisplayAttributesOfSelectedRecord(JScrollPane) - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
buildTreeSelectionListenerToDisplayAttributesOfSelectedRecord(JScrollPane) - Method in class com.pixelmed.query.QueryTreeBrowser
By default this method populates the tabular attribute browser when an entity is selected in the tree browser.
buildTreeSelectionListenerToDoSomethingWithSelectedFiles() - Method in class com.pixelmed.apps.DoseUtility.OurSourceDatabaseTreeBrowser
 
buildTreeSelectionListenerToDoSomethingWithSelectedFiles() - Method in class com.pixelmed.apps.DownloadOrTransmit.OurSourceDatabaseTreeBrowser
 
buildTreeSelectionListenerToDoSomethingWithSelectedFiles() - Method in class com.pixelmed.database.DatabaseTreeBrowser
Override this method to perform application-specific behavior when an entity is selected in the tree browser.
buildTreeSelectionListenerToDoSomethingWithSelectedFiles(String) - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
buildTreeSelectionListenerToDoSomethingWithSelectedLevel() - Method in class com.pixelmed.apps.DoseUtility.OurQueryTreeBrowser
 
buildTreeSelectionListenerToDoSomethingWithSelectedLevel() - Method in class com.pixelmed.apps.DownloadOrTransmit.OurQueryTreeBrowser
 
buildTreeSelectionListenerToDoSomethingWithSelectedLevel() - Method in class com.pixelmed.display.DicomCleaner.OurQueryTreeBrowser
 
buildTreeSelectionListenerToDoSomethingWithSelectedLevel() - Method in class com.pixelmed.query.QueryTreeBrowser
Override this method to perform application-specific behavior when an entity is selected in the tree browser.
buildUIComponents() - Method in class com.pixelmed.display.DicomImageBlackout
 
BurnedInAnnotation - Static variable in class com.pixelmed.dicom.TagFromName
 
burnedinflag - Variable in class com.pixelmed.display.DicomImageBlackout
 
burnInOverlays - Variable in class com.pixelmed.display.DicomImageBlackout
 
BYSOPINSTANCEUIDCOMPONENTFOLDERS - Static variable in class com.pixelmed.dicom.StoredFilePathStrategy
Store all the stored files in a hierarchy of folders using successive numeric components of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.
BYSOPINSTANCEUIDHASHSUBFOLDERS - Static variable in class com.pixelmed.dicom.StoredFilePathStrategy
Store all the stored files in a hierarchy of folders using successive decimal digits of the hashcode of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.
BYSOPINSTANCEUIDINSINGLEFOLDER - Static variable in class com.pixelmed.dicom.StoredFilePathStrategy
Store all the stored files in a single folder, using the SOP Instance UID as the filename.
BYTE - Static variable in class com.pixelmed.convert.TIFFTypes
 
byte_offset_of_binary - Variable in class com.pixelmed.convert.NRRDHeader
 
ByteArray - Class in com.pixelmed.utils
Various static methods helpful for manipulating arrays of bytes and extracting values from them.
byteArrayContainsNonASCIIValues(byte[], int, int) - Static method in class com.pixelmed.dicom.SpecificCharacterSet
Check a byte array for the presence of non-ASCII bytes.
byteArrayContainsNonASCIIValues(byte[]) - Static method in class com.pixelmed.dicom.SpecificCharacterSet
Check a byte array for the presence of non-ASCII bytes.
ByteArrayInputStreamWithOffsetCounterAndOurMethods(byte[]) - Constructor for class com.pixelmed.dicom.CompressedFrameDecoder.ByteArrayInputStreamWithOffsetCounterAndOurMethods
 
byteArrayToHexString(byte[], int, int) - Static method in class com.pixelmed.utils.HexDump
Create a continuous hex string representation of a specified portion of a byte array.
byteArrayToHexString(byte[]) - Static method in class com.pixelmed.utils.HexDump
Create a continuous hex string representation of a byte array.
byteArrayToPrintableString(byte[], int, int) - Static method in class com.pixelmed.utils.HexDump
Create a printable string representation of a specified portion of a byte array in the default character set.
byteArrayToPrintableString(byte[]) - Static method in class com.pixelmed.utils.HexDump
Create a printable string representation of a specified portion of a byte array in the default character set.
ByteFrameSource - Interface in com.pixelmed.dicom
 
byteOffset - Variable in class com.pixelmed.dicom.BinaryOutputStream
 
byteOffset - Variable in class com.pixelmed.dicom.OtherAttributeOnDisk
 
byteOffset - Variable in class com.pixelmed.dicom.SequenceItem
 
byteOffsets - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleFilesOnDisk
 
byteOffsets - Variable in class com.pixelmed.dicom.OtherWordAttributeMultipleFilesOnDisk
 
byteOrder - Variable in class com.pixelmed.convert.TIFFFile
 
bytes - Variable in class com.pixelmed.convert.AnalyzeHeader
 
bytes - Variable in class com.pixelmed.convert.NIfTI1Header
 
byteSizeOfOffsets - Variable in class com.pixelmed.convert.TIFFFile
 
bytesRead - Variable in class com.pixelmed.scpecg.Section
 
byteToPaddedDecimalString(int) - Static method in class com.pixelmed.utils.HexDump
Convert an unsigned byte value to a decimal string of three characters with leading space padding.
byteToPaddedHexString(int) - Static method in class com.pixelmed.utils.HexDump
Convert an unsigned byte value to a hexadecimal string of two characters with leading zero padding.
byteToPaddedHexStringWith0x(int) - Static method in class com.pixelmed.utils.HexDump
Convert an unsigned byte value to a hexadecimal string of two characters with leading 0x and leading zero padding.

C

C - Variable in class com.pixelmed.geometry.GeometryOfSlice
 
C - Variable in class com.pixelmed.geometry.GeometryOfVolume
 
C4 - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
C5 - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
C_CANCEL_RQ - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_ECHO_RQ - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_ECHO_RSP - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_FIND_RQ - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_FIND_RSP - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_GET_RQ - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_GET_RSP - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_MOVE_RQ - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_MOVE_RSP - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_STORE_RQ - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
C_STORE_RSP - Static variable in class com.pixelmed.network.MessageServiceElementCommand
 
cal_max - Variable in class com.pixelmed.convert.AnalyzeHeader
 
cal_max - Variable in class com.pixelmed.convert.NIfTI1Header
 
cal_min - Variable in class com.pixelmed.convert.AnalyzeHeader
 
cal_min - Variable in class com.pixelmed.convert.NIfTI1Header
 
CALIBRATIONILLUMINANT1 - Static variable in class com.pixelmed.convert.TIFFTags
 
CALIBRATIONILLUMINANT2 - Static variable in class com.pixelmed.convert.TIFFTags
 
CalibrationImage - Static variable in class com.pixelmed.dicom.TagFromName
 
calledAETitle - Variable in class com.pixelmed.apps.MultiModalitySimulator
 
calledAETitle - Variable in class com.pixelmed.network.Association
 
calledAETitleField - Variable in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog
 
calledAETitleField - Variable in class com.pixelmed.network.NetworkApplicationConfigurationDialog
 
CALLFUNCTION - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
callingAETitle - Variable in class com.pixelmed.network.Association
 
callingAETitleField - Variable in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog
 
callingAETitleField - Variable in class com.pixelmed.network.NetworkApplicationConfigurationDialog
 
callTarget(Object) - Method in class apple.dts.samplecode.osxadapter.OSXAdapter
 
CAMERACALIBRATION1 - Static variable in class com.pixelmed.convert.TIFFTags
 
CAMERACALIBRATION2 - Static variable in class com.pixelmed.convert.TIFFTags
 
CAMERASERIALNUMBER - Static variable in class com.pixelmed.convert.TIFFTags
 
CancelActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.CancelActionListener
 
CancelActionListener(DicomImageBlackout) - Constructor for class com.pixelmed.display.DicomImageBlackout.CancelActionListener
 
CANCELLED - Static variable in class com.pixelmed.display.DicomImageBlackout.StatusNotificationHandler
 
canConnectToPort(String, int) - Static method in class com.pixelmed.network.ProbeCapability
Can a connection to the specified address and port be established?
canConnectToPort(String, int, int) - Static method in class com.pixelmed.network.ProbeCapability
Can a connection to the specified address and port be established?
canDecompress(File) - Static method in class com.pixelmed.dicom.CompressedFrameDecoder
Returns a whether or not a DICOM file contains pixel data that can be decompressed using this class.
canDecompress(String) - Static method in class com.pixelmed.dicom.CompressedFrameDecoder
Returns a whether or not a DICOM file contains pixel data that can be decompressed using this class.
canUseBzip - Variable in class com.pixelmed.apps.DeidentifyAndRedact.OurMediaImporter
 
canUseBzip - Variable in class com.pixelmed.apps.DoseUtility.OurMediaImporter
 
canUseBzip - Variable in class com.pixelmed.apps.DownloadOrTransmit.OurMediaImporter
 
canUseBzip - Variable in class com.pixelmed.display.DicomCleaner.OurMediaImporter
 
CapabilitiesAvailable - Class in com.pixelmed.utils
Various capability detection methods.
CapabilitiesAvailable() - Constructor for class com.pixelmed.utils.CapabilitiesAvailable
 
CardiacElectrophysiologyWaveformStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
caseSensitiveCodeMeaningValidationCheckBox - Variable in class com.pixelmed.apps.DoseUtility
 
caseSensitiveCodeMeaningValidationLabelText - Static variable in class com.pixelmed.apps.DoseUtility
 
CD2 - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
CEchoRequestCommandMessage - Class in com.pixelmed.network
 
CEchoRequestCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CEchoRequestCommandMessage
 
CEchoRequestCommandMessage() - Constructor for class com.pixelmed.network.CEchoRequestCommandMessage
 
CEchoResponseCommandMessage - Class in com.pixelmed.network
 
CEchoResponseCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CEchoResponseCommandMessage
 
CEchoResponseCommandMessage(String, int, int) - Constructor for class com.pixelmed.network.CEchoResponseCommandMessage
 
CELLLENGTH - Static variable in class com.pixelmed.convert.TIFFTags
 
CELLWIDTH - Static variable in class com.pixelmed.convert.TIFFTags
 
CenterMaximumAfterInitialSizeLayout() - Constructor for class com.pixelmed.display.DicomImageBlackout.CenterMaximumAfterInitialSizeLayout
 
CenterOfCircularShutter - Static variable in class com.pixelmed.dicom.TagFromName
 
centerOfCircularShutterX - Variable in class com.pixelmed.dicom.DisplayShutter
 
centerOfCircularShutterY - Variable in class com.pixelmed.dicom.DisplayShutter
 
CFALAYOUT - Static variable in class com.pixelmed.convert.TIFFTags
 
CFAPLANECOLOR - Static variable in class com.pixelmed.convert.TIFFTags
 
cFindAssociation - Variable in class com.pixelmed.query.QueryInformationModel
 
CFindRequestCommandMessage - Class in com.pixelmed.network
 
CFindRequestCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CFindRequestCommandMessage
 
CFindRequestCommandMessage(String) - Constructor for class com.pixelmed.network.CFindRequestCommandMessage
 
CFindResponseCommandMessage - Class in com.pixelmed.network
 
CFindResponseCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CFindResponseCommandMessage
 
CFindResponseCommandMessage(String, int, int, boolean) - Constructor for class com.pixelmed.network.CFindResponseCommandMessage
 
CFindResponseCommandMessage(String, int, int, boolean, AttributeTagAttribute, String) - Constructor for class com.pixelmed.network.CFindResponseCommandMessage
 
CGetRequestCommandMessage - Class in com.pixelmed.network
 
CGetRequestCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CGetRequestCommandMessage
 
CGetRequestCommandMessage(String) - Constructor for class com.pixelmed.network.CGetRequestCommandMessage
 
CGetResponseCommandMessage - Class in com.pixelmed.network
 
CGetResponseCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CGetResponseCommandMessage
 
CGetResponseCommandMessage(String, int, int, boolean, AttributeTagAttribute, String) - Constructor for class com.pixelmed.network.CGetResponseCommandMessage
 
CGetResponseCommandMessage(String, int, int, boolean, int, int, int, int) - Constructor for class com.pixelmed.network.CGetResponseCommandMessage
 
changed(Event) - Method in class com.pixelmed.event.Listener
 
changeDimensionToFitInMaximumAvailable(Dimension, Dimension, boolean) - Method in class com.pixelmed.display.DicomImageBlackout
 
changesWereMade - Variable in class com.pixelmed.display.DicomImageBlackout
 
ChannelDefinitionSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ChannelLabel - Static variable in class com.pixelmed.dicom.TagFromName
 
channelNames - Variable in class com.pixelmed.displaywave.SourceECG
 
ChannelSensitivity - Static variable in class com.pixelmed.dicom.TagFromName
 
ChannelSensitivityCorrectionFactor - Static variable in class com.pixelmed.dicom.TagFromName
 
ChannelSensitivityUnitsSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ChannelSourceSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
check3D2DConversion(GeometryOfSlice, double, double, double, double, double) - Method in class com.pixelmed.test.TestGeometryOfSlice
 
checkAllAreAsExpected(AttributeList) - Method in class com.pixelmed.test.TestCleanerReceiveAndClean
 
CheckAllUIDReferencesResolve - Class in com.pixelmed.apps
A class to process a set of multiple files and check that all referenced SOP Instances are present within the set.
CheckAllUIDReferencesResolve(String[]) - Constructor for class com.pixelmed.apps.CheckAllUIDReferencesResolve
Process a set of multiple files and check that all referenced SOP Instances are present within the set.
CheckAllUIDReferencesResolve.OurMediaImporter - Class in com.pixelmed.apps
 
checkAndSetVolumeSampledRegularlyAlongFrameDimension() - Method in class com.pixelmed.geometry.GeometryOfVolume
Check if the set of frames regularly sampled along the frame dimension.
checkIsAsExpected(AttributeList) - Method in class com.pixelmed.test.TestCleanerReceiveAndClean.ExpectedResult
 
checkIsEventDispatchThreadElseException() - Static method in class com.pixelmed.utils.ThreadUtilities
 
checkSanityOfValueLength(long, byte[], AttributeTag, boolean) - Method in class com.pixelmed.dicom.AttributeList
Check that the value length is reasonable under the circumstances.
checkUnitIs_mGy(CodedSequenceItem) - Static method in class com.pixelmed.dose.CTDoseAcquisition
 
checkUnitIs_mGycm(CodedSequenceItem) - Static method in class com.pixelmed.dose.CTDoseAcquisition
 
ChestCADSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
ChestImageViewer - Class in com.pixelmed.display
This class is an entire application for displaying and viewing chest x-ray images.
ChestImageViewer(String[]) - Constructor for class com.pixelmed.display.ChestImageViewer
 
children() - Method in class com.pixelmed.database.DatabaseTreeRecord
Returns the children of this node as an Enumeration.
children() - Method in class com.pixelmed.dicom.AttributeTreeRecord
Returns the children of this node as an Enumeration.
children() - Method in class com.pixelmed.dicom.ContentItem
Returns the children of this node as an Enumeration.
children() - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
children - Variable in class com.pixelmed.query.QueryTreeRecord
 
children() - Method in class com.pixelmed.query.QueryTreeRecord
Returns the children of this node as an Enumeration.
children() - Method in class com.pixelmed.scpecg.SCPTreeRecord
Returns the children of this node as an Enumeration.
childrenPopulated - Variable in class com.pixelmed.query.QueryTreeRecord
 
chooseAppropriateConvertedSOPClassUID(AttributeList) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Given the Attributes of a "classic" single frame instance, choose an appropriate multi-frame (enhanced) image SOP Class to convert it to.
chooseExcludeList(DicomDirectoryRecord) - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
chooseOutputFormatForTransferSyntax(String) - Static method in class com.pixelmed.dicom.CompressedFrameEncoder
Determine the output format string used by the JIIO codecs for the DICOM Transfer Syntax.
choosePathAndImportDicomFiles(Component) - Method in class com.pixelmed.dicom.MediaImporter
Pop up a file chooser dialog that allows the user to specify the location of the DICOMDIR file, or the parent folder (for example, the drive or volume) in which the DICOMDIR file is located, and then import the referenced files.
choosePathAndImportDicomFiles() - Method in class com.pixelmed.dicom.MediaImporter
Pop up a file chooser dialog that allows the user to specify the location of the DICOMDIR file, or the parent folder (for example, the drive or volume) in which the DICOMDIR file is located, and then import the referenced files.
choosePathsAndConvertAmicasFiles() - Method in class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom
Pop up folder chooser dialogs that allow the user to specify the location of the amicas-patients folder, or the parent folder (for example, the drive or volume) in which the amicas-patients folder is located, and the output folder to store the converted DICOM files, and then perform the conversion.
chooser - Variable in class com.pixelmed.display.SafeFileChooser
 
chooseTransferSyntaxForOutputFormat(String) - Static method in class com.pixelmed.dicom.CompressedFrameEncoder
Determine the DICOM Transfer Syntax for the output format string used by the JIIO codecs.
CHROMABLURRADIUS - Static variable in class com.pixelmed.convert.TIFFTags
 
cieLabScaled - Variable in class com.pixelmed.display.SuperimposedImage
 
cineSlider - Variable in class com.pixelmed.display.DicomImageBlackout
 
cineSliderChangeListener - Variable in class com.pixelmed.display.DicomImageBlackout
 
CineSliderChangeListener() - Constructor for class com.pixelmed.display.DicomImageBlackout.CineSliderChangeListener
 
cineSliderControlsPanel - Variable in class com.pixelmed.display.DicomImageBlackout
 
classifyCornersIntoEdgeCrossingZPlane(Point3d, Point3d) - Static method in class com.pixelmed.geometry.LocalizerPoster
 
className - Variable in class com.pixelmed.slf4j.Logger
 
clean(Object) - Static method in class com.pixelmed.display.SourceImage
 
CleanActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.CleanActionListener
 
CLEANFAXDATA - Static variable in class com.pixelmed.convert.TIFFTags
 
cleanUIDsCheckBox - Variable in class com.pixelmed.display.DicomCleaner
 
cleanUIDsLabelText - Static variable in class com.pixelmed.test.TestCleanerReceiveAndClean
 
clear() - Method in class com.pixelmed.display.ChestImageViewer
 
clear() - Method in class com.pixelmed.display.MammoImageViewer
 
ClearActionListener() - Constructor for class com.pixelmed.display.DialogMessageLogger.ClearActionListener
 
ClinicalTrialCoordinatingCenterName - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialProtocolID - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialProtocolName - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialsAttributes - Class in com.pixelmed.dicom
An abstract class of static methods to support removing identifying attributes and adding Clinical Trials Patient, Study and Series Modules attributes.
ClinicalTrialsAttributes.HandleDates - Class in com.pixelmed.dicom
 
ClinicalTrialsAttributes.HandleStructuredContent - Class in com.pixelmed.dicom
 
ClinicalTrialsAttributes.HandleUIDs - Class in com.pixelmed.dicom
 
ClinicalTrialSeriesDescription - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialSiteID - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialSiteName - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialSponsorName - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialSubjectID - Static variable in class com.pixelmed.dicom.TagFromName
 
clinicalTrialSubjectModuleAttributeTags - Static variable in class com.pixelmed.dicom.CompositeInstanceContext
 
ClinicalTrialSubjectReadingID - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialTimePointDescription - Static variable in class com.pixelmed.dicom.TagFromName
 
ClinicalTrialTimePointID - Static variable in class com.pixelmed.dicom.TagFromName
 
CLIPPATH - Static variable in class com.pixelmed.convert.TIFFTags
 
clone() - Method in class com.pixelmed.display.DisplayedAreaSelection
 
close() - Method in class com.pixelmed.database.DatabaseInformationModel
Close the underlying connection to the database and shutdown any external SQL server.
close() - Method in class com.pixelmed.dicom.AsynchronousOutputStream
Closes this output stream and releases any system resources associated with the stream.
close() - Method in class com.pixelmed.dicom.NullOutputStream
 
close() - Method in class com.pixelmed.display.SourceImage
 
close() - Method in class com.pixelmed.display.SourceImageSubset
 
close() - Method in class com.pixelmed.network.AssociationOutputStream
Sets the last fragment flag and flushes (which sends a zero length PDU if necessary, and pads to an even length, if necessary).
close() - Method in class com.pixelmed.network.NetworkConfigurationSource
Close down any running threads related to an instance of this class.
close() - Method in interface com.pixelmed.query.QueryResponseGenerator
Clean up after the query has completed.
close() - Method in interface com.pixelmed.query.RetrieveResponseGenerator
Clean up after the retrieval has completed.
close() - Method in class com.pixelmed.transfermonitor.MonitoredInputStream
 
close() - Method in class com.pixelmed.transfermonitor.MonitoredOutputStream
 
close() - Method in class com.pixelmed.transfermonitor.TransferMonitoringContext
Close the monitoring context since no more transfers are expected.
close() - Method in class com.pixelmed.utils.ScrollingTextAreaWriter
 
closePdfFile() - Method in class com.pixelmed.utils.PdfDecoder
 
cMoveAssociation - Variable in class com.pixelmed.query.QueryInformationModel
 
CMoveRequestCommandMessage - Class in com.pixelmed.network
 
CMoveRequestCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CMoveRequestCommandMessage
 
CMoveRequestCommandMessage(String, String) - Constructor for class com.pixelmed.network.CMoveRequestCommandMessage
 
CMoveResponseCommandMessage - Class in com.pixelmed.network
 
CMoveResponseCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CMoveResponseCommandMessage
 
CMoveResponseCommandMessage(String, int, int, boolean, AttributeTagAttribute, String) - Constructor for class com.pixelmed.network.CMoveResponseCommandMessage
 
CMoveResponseCommandMessage(String, int, int, boolean, int, int, int, int) - Constructor for class com.pixelmed.network.CMoveResponseCommandMessage
 
CodeContentItem(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CodeContentItem
 
CodeContentItem(ContentItem, String, CodedSequenceItem, CodedSequenceItem, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CodeContentItem
 
CodeContentItem(ContentItem, String, CodedSequenceItem, CodedSequenceItem) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CodeContentItem
 
codeContentItemValueMatchesCodeValueAndCodingSchemeDesignator(ContentItem, String, String) - Static method in class com.pixelmed.dicom.ContentItemFactory
Test if the coded value of the code content item matches the specified code value and coding scheme designator.
CodedConcept - Class in com.pixelmed.anatproc
This class represents a concept that has a coded representation.
CodedConcept(String, String, String, String, String, String, String, String, String[]) - Constructor for class com.pixelmed.anatproc.CodedConcept
Create a coded concept.
CodedConcept() - Constructor for class com.pixelmed.anatproc.CodedConcept
 
CodedSequenceItem - Class in com.pixelmed.dicom
A class to encapsulate the attributes contained within a Sequence Item that represents a Coded Sequence item.
CodedSequenceItem(AttributeList) - Constructor for class com.pixelmed.dicom.CodedSequenceItem
Construct a CodedSequenceItem from a list of attributes.
CodedSequenceItem(String, String, String) - Constructor for class com.pixelmed.dicom.CodedSequenceItem
Construct a CodedSequenceItem from string values for code value, scheme and meaning.
CodedSequenceItem(String, String, String, String) - Constructor for class com.pixelmed.dicom.CodedSequenceItem
Construct a CodedSequenceItem from string values for code value, scheme, version and meaning.
CodedSequenceItem(String) - Constructor for class com.pixelmed.dicom.CodedSequenceItem
Construct a CodedSequenceItem from a single string representation of the tuple enclosed in parentheses.
codeMeaning - Variable in class com.pixelmed.anatproc.CodedConcept
 
codeMeaning - Variable in class com.pixelmed.apps.InsertCodeSequence
 
CodeMeaning - Static variable in class com.pixelmed.dicom.TagFromName
 
CODEMEANING - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
CodeStringAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Code String (CS) attributes.
CodeStringAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.CodeStringAttribute
Construct an (empty) attribute.
CodeStringAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.CodeStringAttribute
Read an attribute from an input stream.
CodeStringAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.CodeStringAttribute
Read an attribute from an input stream.
codeStringEquivalent - Variable in class com.pixelmed.anatproc.CodedConcept
 
codeStringEquivalentToConceptEntries - Variable in class com.pixelmed.anatproc.DictionaryOfConcepts
 
codeValue - Variable in class com.pixelmed.anatproc.CodedConcept
 
codeValue - Variable in class com.pixelmed.anatproc.SchemeAndValuePair
 
codeValue - Variable in class com.pixelmed.apps.InsertCodeSequence
 
CodeValue - Static variable in class com.pixelmed.dicom.TagFromName
 
CODINGMETHODS - Static variable in class com.pixelmed.convert.TIFFTags
 
codingSchemeDesignator - Variable in class com.pixelmed.anatproc.CodedConcept
 
codingSchemeDesignator - Variable in class com.pixelmed.anatproc.SchemeAndValuePair
 
codingSchemeDesignator - Variable in class com.pixelmed.apps.InsertCodeSequence
 
codingSchemeDesignator - Variable in class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
CodingSchemeDesignator - Static variable in class com.pixelmed.dicom.TagFromName
 
CodingSchemeIdentification - Class in com.pixelmed.dicom
A class to encapsulate the information related to Coding Scheme Identification encoded in composite instances within CodingSchemeIdentificationSequence.
CodingSchemeIdentification(AttributeList) - Constructor for class com.pixelmed.dicom.CodingSchemeIdentification
Construct a CodingSchemeIdentification instance from the CodingSchemeIdentificationSequence in the supplied list.
CodingSchemeIdentification(List<CodingSchemeIdentificationItem>) - Constructor for class com.pixelmed.dicom.CodingSchemeIdentification
Construct a CodingSchemeIdentification from a list of CodingSchemeIdentificationItems.
CodingSchemeIdentificationItem - Class in com.pixelmed.dicom
A class to encapsulate the attributes of an Item of CodingSchemeIdentificationSequence.
CodingSchemeIdentificationItem(String, String, String, String) - Constructor for class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
CodingSchemeIdentificationItem(SequenceItem) - Constructor for class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
CodingSchemeIdentificationSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
codingSchemeName - Variable in class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
CodingSchemeName - Static variable in class com.pixelmed.dicom.TagFromName
 
codingSchemeRegistry - Variable in class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
CodingSchemeRegistry - Static variable in class com.pixelmed.dicom.TagFromName
 
CodingSchemeResponsibleOrganization - Static variable in class com.pixelmed.dicom.TagFromName
 
codingSchemeUID - Variable in class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
CodingSchemeUID - Static variable in class com.pixelmed.dicom.TagFromName
 
codingSchemeUIDFor99IPCMR - Static variable in class com.pixelmed.dicom.VersionAndConstants
 
codingSchemeUIDFor99PMP - Static variable in class com.pixelmed.dicom.VersionAndConstants
 
codingSchemeVersion - Variable in class com.pixelmed.anatproc.CodedConcept
 
codingSchemeVersion - Variable in class com.pixelmed.apps.InsertCodeSequence
 
CodingSchemeVersion - Static variable in class com.pixelmed.dicom.TagFromName
 
CoercionModel - Class in com.pixelmed.dicom
A class to encapsulate patient and study information to be used for coercion of identifiers in DICOM instances.
CoercionModel(Vector) - Constructor for class com.pixelmed.dicom.CoercionModel
 
ColonCADSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
COLOR_ANNOTATIONS - Static variable in class com.pixelmed.display.ConsumerFormatImageMaker
 
COLORMAP - Static variable in class com.pixelmed.convert.TIFFTags
 
COLORMATRIX1 - Static variable in class com.pixelmed.convert.TIFFTags
 
COLORMATRIX2 - Static variable in class com.pixelmed.convert.TIFFTags
 
ColorPalette - Class in com.pixelmed.dicom
A class to encapsulate color palettes, including serialization and deserialization to and from standard DICOM color palette IODs.
ColorPalette() - Constructor for class com.pixelmed.dicom.ColorPalette
 
ColorPaletteHotIron - Class in com.pixelmed.dicom
Standard DICOM Hot Iron color palette.
ColorPaletteHotIron() - Constructor for class com.pixelmed.dicom.ColorPaletteHotIron
 
ColorPaletteHotMetalBlue - Class in com.pixelmed.dicom
Standard DICOM Hot Metal Blue color palette.
ColorPaletteHotMetalBlue() - Constructor for class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
ColorPaletteInformationModelFind - Static variable in class com.pixelmed.dicom.SOPClass
 
ColorPaletteInformationModelGet - Static variable in class com.pixelmed.dicom.SOPClass
 
ColorPaletteInformationModelMove - Static variable in class com.pixelmed.dicom.SOPClass
 
ColorPalettePET - Class in com.pixelmed.dicom
Standard DICOM PET color palette.
ColorPalettePET() - Constructor for class com.pixelmed.dicom.ColorPalettePET
 
ColorPalettePET20Step - Class in com.pixelmed.dicom
Standard DICOM PET 20 Step color palette.
ColorPalettePET20Step() - Constructor for class com.pixelmed.dicom.ColorPalettePET20Step
 
ColorPaletteStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
COLORRESPONSEUNIT - Static variable in class com.pixelmed.convert.TIFFTags
 
ColorSoftcopyPresentationStateStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
colorSpaceWasConvertedToRGBDuringDecompression - Variable in class com.pixelmed.dicom.AttributeList
 
ColorUtilities - Class in com.pixelmed.utils
Various static methods helpful for color conversions.
column - Variable in class com.pixelmed.geometry.GeometryOfSlice
 
columnArray - Variable in class com.pixelmed.geometry.GeometryOfSlice
 
columnCount - Variable in class com.pixelmed.database.MapTableModel
 
columnCount - Variable in class com.pixelmed.dicom.AttributeListTableModel
 
columnForFrame - Variable in class com.pixelmed.dicom.TiledFramesIndex
 
columnNames - Variable in class com.pixelmed.database.MapTableModel
 
columnNames - Variable in class com.pixelmed.dicom.AttributeListTableModel
 
ColumnPositionInTotalImagePixelMatrix - Static variable in class com.pixelmed.dicom.TagFromName
 
columns - Variable in class com.pixelmed.convert.RawImageDescription
 
Columns - Static variable in class com.pixelmed.dicom.TagFromName
 
columnSpacing - Variable in class com.pixelmed.display.DisplayedAreaSelection
 
com.pixelmed.anatproc - package com.pixelmed.anatproc
Classes for encapsulating and extracting textutal and coded anatomic information.
com.pixelmed.apps - package com.pixelmed.apps
Various miscellaneous applications.
com.pixelmed.convert - package com.pixelmed.convert
Classes for converting proprietary image formats to DICOM.
com.pixelmed.database - package com.pixelmed.database
Abstracts any underlying database support for applications using the DICOM toolkit and needing access to persistent storage of entities in the DICOM information model.
com.pixelmed.dicom - package com.pixelmed.dicom
Classes for constructing, reading, writing and manipulating DICOM composite objects.
com.pixelmed.display - package com.pixelmed.display
Classes for displaying DICOM composite objects, including images and spectra.
com.pixelmed.display.event - package com.pixelmed.display.event
Classes for processing events related to displaying and navigating through images and spectra.
com.pixelmed.displaywave - package com.pixelmed.displaywave
Classes for displaying ECG waveforms, including DICOM and SCP-ECG files.
com.pixelmed.dose - package com.pixelmed.dose
Classes for encapsulating and extracting radiation dose information.
com.pixelmed.doseocr - package com.pixelmed.doseocr
Classes for extracting radiation dose information from screen images and transforming into Dose SR objects.
com.pixelmed.event - package com.pixelmed.event
 
com.pixelmed.ftp - package com.pixelmed.ftp
FTP transfer of files.
com.pixelmed.geometry - package com.pixelmed.geometry
Classes for posting localizer and other orthogonal images with projections or intersections of images.
com.pixelmed.network - package com.pixelmed.network
Classes for sending, receiving, querying and retrieving DICOM composite objects on the network, as well as supporting lower level functions.
com.pixelmed.query - package com.pixelmed.query
Encapsulation of DICOM queries into a higher level abstraction that supports creation of a tree model based on the results of a query, and a graphical user interface to that model.
com.pixelmed.scpecg - package com.pixelmed.scpecg
Classes for reading SCP-ECG files.
com.pixelmed.server - package com.pixelmed.server
Implements a DICOM storage server that provides a database, DICOM query and retrieval, and Web Access to DICOM Objects (WADO) .
com.pixelmed.slf4j - package com.pixelmed.slf4j
Implements a thin wrapper around a subset of classes and methods of SLFJ.
com.pixelmed.test - package com.pixelmed.test
Classes for unit testing.
com.pixelmed.transfermonitor - package com.pixelmed.transfermonitor
 
com.pixelmed.utils - package com.pixelmed.utils
Various miscellaneous utilities, mainly static methods.
com.pixelmed.validate - package com.pixelmed.validate
A package for validating composite instances against the corresponding DICOM standard IOD.
com.pixelmed.web - package com.pixelmed.web
Implements Web Access to DICOM Objects (WADO) as defined in DICOM PS 3.18 (ISO 17432).
combinations - Static variable in class com.pixelmed.anatproc.CombinedAnatomicConcepts
 
CombinedAnatomicConcepts - Class in com.pixelmed.anatproc
This class supports anatomic concepts that may be combinations of one another.
CombinedAnatomicConcepts() - Constructor for class com.pixelmed.anatproc.CombinedAnatomicConcepts
 
CommandDataSetType - Static variable in class com.pixelmed.dicom.TagFromName
 
CommandField - Static variable in class com.pixelmed.dicom.TagFromName
 
CommandLengthToEnd - Static variable in class com.pixelmed.dicom.TagFromName
 
commandReceived - Variable in class com.pixelmed.network.CompositeResponseHandler
 
comment - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
CommentsOnThePerformedProcedureStep - Static variable in class com.pixelmed.dicom.TagFromName
 
CommonConvertedAttributeGeneration - Class in com.pixelmed.convert
A class to support converting proprietary image input format files into images of a specified or appropriate SOP Class.
CommonConvertedAttributeGeneration() - Constructor for class com.pixelmed.convert.CommonConvertedAttributeGeneration
 
CommonDoseObserverContext - Class in com.pixelmed.dose
 
CommonDoseObserverContext() - Constructor for class com.pixelmed.dose.CommonDoseObserverContext
 
CommonDoseObserverContext(String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class com.pixelmed.dose.CommonDoseObserverContext
 
commonPortNumbers - Static variable in class com.pixelmed.network.NetworkDefaultValues
 
compareStringsThatMayBeIntegers(String, String) - Static method in class com.pixelmed.utils.StringUtilities
Compare strings based on their integer value of they are both integers, otherwise their lexicographic order.
compareStringsWithEmbeddedNonZeroPaddedIntegers(String, String) - Static method in class com.pixelmed.utils.StringUtilities
Compare strings based on the lexicographic order of their values, but accounting for non-zero padded integers.
compareTo(Object) - Method in class com.pixelmed.database.DatabaseTreeRecord
Compare nodes based on the lexicographic order of their string values.
compareTo(Object) - Method in class com.pixelmed.dicom.AttributeTag
Compare tags based on the numeric order of their group and then element values.
compareTo(Object) - Method in class com.pixelmed.dicom.AttributeTreeRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.ConcatenationDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.HL7StructuredDocumentDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.ImageDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.PatientDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.SeriesDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.SpectroscopyDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecordFactory.StudyDirectoryRecord
 
compareTo(Object) - Method in class com.pixelmed.dicom.InformationEntity
Is this information entity higher in the model than the specified information entity ?
compareTo(Object) - Method in class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
 
compareTo(Object) - Method in class com.pixelmed.dose.CTPhantomType
 
compareTo(Object) - Method in class com.pixelmed.query.QueryTreeRecord
Compare nodes based on the lexicographic order of their string values.
compareTo(Object) - Method in class com.pixelmed.scpecg.SCPTreeRecord
 
compareToByIntegerValue(DicomDirectoryRecord, boolean) - Method in class com.pixelmed.dicom.DicomDirectoryRecord
Compares this object with the specified directory record for order based on integer value.
compareToByStringValue(DicomDirectoryRecord, boolean) - Method in class com.pixelmed.dicom.DicomDirectoryRecord
Compares this object with the specified directory record for order based on string value.
CompensatorThicknessData - Static variable in class com.pixelmed.dicom.TagFromName
 
CompensatorTransmissionData - Static variable in class com.pixelmed.dicom.TagFromName
 
CompileXSLTIntoTranslet - Class in com.pixelmed.validate
make a translet from any XSL-T source file.
CompileXSLTIntoTranslet() - Constructor for class com.pixelmed.validate.CompileXSLTIntoTranslet
 
COMPLETED - Static variable in class com.pixelmed.display.DicomImageBlackout.StatusNotificationHandler
 
completedStudiesFolder - Variable in class com.pixelmed.apps.StudyReceiver
 
CompletionFlag - Static variable in class com.pixelmed.dicom.TagFromName
 
ComplexImageComponent - Static variable in class com.pixelmed.dicom.TagFromName
 
component - Variable in class com.pixelmed.display.SafeCursorChanger
 
CompositeContentItem(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CompositeContentItem
 
CompositeContentItem(ContentItem, String, CodedSequenceItem, String, String, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CompositeContentItem
 
CompositeContentItem(ContentItem, String, CodedSequenceItem, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CompositeContentItem
 
CompositeContentItem(ContentItem, String, String, CodedSequenceItem, String, String, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CompositeContentItem
 
CompositeContentItem(ContentItem, String, String, CodedSequenceItem, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.CompositeContentItem
 
CompositeInstanceContext - Class in com.pixelmed.dicom
A class for representing the attributes of general modules that describe the patient, study, series, instance and related "context" of the payload of a composite DICOM instance.
CompositeInstanceContext() - Constructor for class com.pixelmed.dicom.CompositeInstanceContext
 
CompositeInstanceContext(AttributeList, boolean) - Constructor for class com.pixelmed.dicom.CompositeInstanceContext
Create the composite context module Attributes with values from the supplied AttributeList.
compositeInstanceContext - Variable in class com.pixelmed.dicom.ImageLibrary
 
compositeInstanceContext - Variable in class com.pixelmed.dose.CTDose
 
CompositeInstanceContext.Selector - Class in com.pixelmed.dicom
A class to select which entities are copied or propagated or removed or not during operations on CompositeInstanceContext.
CompositeInstanceStoreAbstractSyntaxSelectionPolicy - Class in com.pixelmed.network
Accept only SOP Classes for storage of composite instances and verification SOP Classes.
CompositeInstanceStoreAbstractSyntaxSelectionPolicy() - Constructor for class com.pixelmed.network.CompositeInstanceStoreAbstractSyntaxSelectionPolicy
 
CompositeInstanceStoreFindMoveGetAbstractSyntaxSelectionPolicy - Class in com.pixelmed.network
Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes.
CompositeInstanceStoreFindMoveGetAbstractSyntaxSelectionPolicy() - Constructor for class com.pixelmed.network.CompositeInstanceStoreFindMoveGetAbstractSyntaxSelectionPolicy
 
CompositeResponseHandler - Class in com.pixelmed.network
This abstract class provides a mechanism to process each PDU of a composite response as it is received, such as for evaluating the status of the response for success.
CompositeResponseHandler() - Constructor for class com.pixelmed.network.CompositeResponseHandler
Construct a handler to process each PDU of a composite response as it is received, evaluating the status of the response for success.
CompositingPlanarMPRVolumetricPresentationStateStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
Comprehensive3DSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
ComprehensiveSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
ComprehensiveSRStorageTrialRetired - Static variable in class com.pixelmed.dicom.SOPClass
 
CompressDicomFiles - Class in com.pixelmed.apps
This class copies a set of DICOM image files, compressing them losslessly with JPEG 2000 (default), JPEG 10918-1 Lossless Huffman SV1, JPEG-LS or RLE.
CompressDicomFiles(MessageLogger) - Constructor for class com.pixelmed.apps.CompressDicomFiles
 
compressed - Variable in class com.pixelmed.convert.AnalyzeHeader
 
CompressedFrameDecoder - Class in com.pixelmed.dicom
The CompressedFrameDecoder class implements decompression of selected frames in various supported Transfer Syntaxes once already extracted from DICOM encapsulated images.
CompressedFrameDecoder(String, int, int, int, int, ColorSpace) - Constructor for class com.pixelmed.dicom.CompressedFrameDecoder
 
CompressedFrameDecoder(String, ByteFrameSource, int, int, int, int, ColorSpace) - Constructor for class com.pixelmed.dicom.CompressedFrameDecoder
 
CompressedFrameDecoder(String, byte[][], int, int, int, int, ColorSpace) - Constructor for class com.pixelmed.dicom.CompressedFrameDecoder
 
CompressedFrameDecoder.ByteArrayInputStreamWithOffsetCounterAndOurMethods - Class in com.pixelmed.dicom
 
CompressedFrameEncoder - Class in com.pixelmed.dicom
The CompressedFrameEncoder class implements compression of specified frames in various supported Transfer Syntaxes, which can then be incorporated in DICOM encapsulated images.
CompressedFrameEncoder() - Constructor for class com.pixelmed.dicom.CompressedFrameEncoder
 
COMPRESSION - Static variable in class com.pixelmed.convert.TIFFTags
 
compressionRatio - Variable in class com.pixelmed.dicom.AttributeList
 
COMPUTED_FROM_IMAGE_ATTRIBUTES - Static variable in class com.pixelmed.dose.SourceOfDoseInformation
 
ComputedRadiographyImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
computeRowAndColumnForFrame() - Method in class com.pixelmed.dicom.TiledFramesIndex
 
concatenate(byte[], int, int, byte[], int, int) - Static method in class com.pixelmed.utils.ByteArray
Concatenate portions of two byte arrays into a new byte array.
concatenate(byte[], byte[]) - Static method in class com.pixelmed.utils.ByteArray
Concatenate the entire contents of two byte arrays into a new byte array.
CONCATENATION - Static variable in class com.pixelmed.dicom.InformationEntity
 
ConcatenationFrameOffsetNumber - Static variable in class com.pixelmed.dicom.TagFromName
 
ConcatenationUID - Static variable in class com.pixelmed.dicom.TagFromName
 
concatentation - Static variable in class com.pixelmed.dicom.DicomDirectoryRecordType
 
Concept - Class in com.pixelmed.anatproc
This class represents a concept that is uniquely identifiable.
Concept(String) - Constructor for class com.pixelmed.anatproc.Concept
Create a concept.
Concept() - Constructor for class com.pixelmed.anatproc.Concept
 
conceptCode - Variable in class com.pixelmed.dicom.ContentItemFactory.CodeContentItem
 
ConceptCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
conceptEntries - Variable in class com.pixelmed.anatproc.DictionaryOfConcepts
 
conceptIdentifier - Variable in class com.pixelmed.anatproc.CodedConcept
 
conceptIdentifierToConceptEntries - Variable in class com.pixelmed.anatproc.DictionaryOfConcepts
 
conceptName - Variable in class com.pixelmed.dicom.ContentItemWithValue
 
ConceptNameCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
conceptUniqueIdentifier - Variable in class com.pixelmed.anatproc.Concept
 
conceptUniqueIdentifierToConceptEntries - Variable in class com.pixelmed.anatproc.DictionaryOfConcepts
 
CONEBEAM - Static variable in class com.pixelmed.dose.CTScanType
 
ConfigureActionListener() - Constructor for class com.pixelmed.apps.DoseUtility.ConfigureActionListener
 
ConfigureActionListener() - Constructor for class com.pixelmed.apps.DownloadOrTransmit.ConfigureActionListener
 
ConfigureActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.ConfigureActionListener
 
configureButtonLabel - Static variable in class com.pixelmed.apps.DoseUtility
 
configureButtonLabel - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
configureButtonToolTipText - Static variable in class com.pixelmed.apps.DoseUtility
 
configureButtonToolTipText - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
CONSECUTIVEBADFAXLINES - Static variable in class com.pixelmed.convert.TIFFTags
 
constructCrossSectionalImageLibraryEntry(HierarchicalImageReference, String, GeometryOfSlice) - Method in class com.pixelmed.dicom.CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
 
constructImageLibrary(ContentItem, AttributeList) - Method in class com.pixelmed.dicom.ImageLibrary
Construct an Image Library by extracting it from an existing DICOM SR instance.
constructImageLibraryEntry(HierarchicalImageReference) - Method in class com.pixelmed.dicom.ImageLibrary.ImageLibraryEntry
 
constructOnlyQualifier(CodedSequenceItem) - Method in class com.pixelmed.dicom.ContentItemFactory.NumericContentItem
 
constructProjectionXRayImageLibraryEntry(HierarchicalImageReference, CodedSequenceItem, CodedSequenceItem, CodedSequenceItem, CodedSequenceItem, String, String, String, String, String, String, String, String, String, String) - Method in class com.pixelmed.dicom.ProjectionXRayImageLibrary.ProjectionXRayImageLibraryEntry
 
ConsumerFormatImageMaker - Class in com.pixelmed.display
A class of static methods to make consumer format images from DICOM images.
ConsumerFormatImageMaker() - Constructor for class com.pixelmed.display.ConsumerFormatImageMaker
 
ContainerContentItem(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemFactory.ContainerContentItem
 
ContainerContentItem(ContentItem, String, CodedSequenceItem, boolean, String, String, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.ContainerContentItem
 
ContainerContentItem(ContentItem, String, CodedSequenceItem, boolean, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.ContainerContentItem
 
ContainerContentItem(ContentItem, String, CodedSequenceItem, boolean) - Constructor for class com.pixelmed.dicom.ContentItemFactory.ContainerContentItem
 
ContainerContentItem(ContentItem, String, CodedSequenceItem) - Constructor for class com.pixelmed.dicom.ContentItemFactory.ContainerContentItem
 
contains(String, String[]) - Static method in class com.pixelmed.utils.StringUtilities
Does a string contain any one of an array of strings ?
containsLastCommandFragment() - Method in class com.pixelmed.network.PDataPDU
 
containsLastDataFragment() - Method in class com.pixelmed.network.PDataPDU
 
containsOverlay(AttributeList) - Static method in class com.pixelmed.apps.PseudonymizeAndSequester
 
containsRegardlessOfCase(String, String[]) - Static method in class com.pixelmed.utils.StringUtilities
Does a string contain any one of an array of strings regardless of case ?
ContentCreatorIdentificationCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
contentCreatorName - Variable in class com.pixelmed.dicom.ColorPalette
 
ContentCreatorName - Static variable in class com.pixelmed.dicom.TagFromName
 
contentCreatorNameStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
contentCreatorNameStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
contentCreatorNameStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
contentCreatorNameStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
contentDate - Variable in class com.pixelmed.dicom.ProjectionXRayImageLibrary.ProjectionXRayImageLibraryEntry
 
ContentDate - Static variable in class com.pixelmed.dicom.TagFromName
 
contentDescription - Variable in class com.pixelmed.dicom.ColorPalette
 
ContentDescription - Static variable in class com.pixelmed.dicom.TagFromName
 
contentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
contentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
contentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
contentDescriptionStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
ContentItem - Class in com.pixelmed.dicom
An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).
ContentItem(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItem
Construct a content item for a list of attributes, and add it as a child of the specified parent.
ContentItem(ContentItem, String, String, String) - Constructor for class com.pixelmed.dicom.ContentItem
Construct a content item of a specified type and relationship, creating a new AttributeList, and add it as a child of the specified parent.
ContentItem(ContentItem, String) - Constructor for class com.pixelmed.dicom.ContentItem
Construct a content item of a specified type and relationship, creating a new AttributeList, and add it as a child of the specified parent.
ContentItemFactory - Class in com.pixelmed.dicom
A class with methods for constructing a ContentItem of the appropriate class from a list of attributes.
ContentItemFactory() - Constructor for class com.pixelmed.dicom.ContentItemFactory
 
contentItemFactory - Variable in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
 
ContentItemFactory.CodeContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.CompositeContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.ContainerContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.DateContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.DateTimeContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.ImageContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.NumericContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.PersonNameContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.SpatialCoordinates3DContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.SpatialCoordinatesContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.StringContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.TemporalCoordinatesContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.TextContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.TimeContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.UIDContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.UnrecognizedContentItem - Class in com.pixelmed.dicom
 
ContentItemFactory.WaveformContentItem - Class in com.pixelmed.dicom
 
contentItemFragment - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
contentItemFragment - Variable in class com.pixelmed.dose.CTDoseAcquisition
 
contentItemIdentiferPrefix - Static variable in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
 
contentItemNameMatchesCodeValueAndCodingSchemeDesignator(String, String) - Method in class com.pixelmed.dicom.ContentItem
Test if the coded concept name of the content item matches the specified code value and coding scheme designator.
contentItemNameMatchesCodeValueAndCodingSchemeDesignator(ContentItem, String, String) - Static method in class com.pixelmed.dicom.ContentItem
Test if the coded concept name of the content item matches the specified code value and coding scheme designator.
contentItemNameMatchesCodeValueAndCodingSchemeDesignator(String, String) - Method in class com.pixelmed.dicom.ContentItemWithReference
 
contentItemNameMatchesCodeValueAndCodingSchemeDesignator(String, String) - Method in class com.pixelmed.dicom.ContentItemWithValue
 
contentItemValueMatchesCodeValueAndCodingSchemeDesignator(String, String) - Method in class com.pixelmed.dicom.ContentItemFactory.CodeContentItem
Test if the coded value of the code content item matches the specified code value and coding scheme designator.
ContentItemWithReference - Class in com.pixelmed.dicom
An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).
ContentItemWithReference(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemWithReference
Construct a content item for a list of attributes, and add it as a child of the specified parent.
ContentItemWithReference(ContentItem, String, String) - Constructor for class com.pixelmed.dicom.ContentItemWithReference
Construct a content item of a specified type and relationship, creating a new AttributeList, and add it as a child of the specified parent.
ContentItemWithValue - Class in com.pixelmed.dicom
An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).
ContentItemWithValue(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemWithValue
Construct a content item for a list of attributes, and add it as a child of the specified parent.
ContentItemWithValue(ContentItem, String, String, CodedSequenceItem, String, String) - Constructor for class com.pixelmed.dicom.ContentItemWithValue
Construct a content item of a specified type and relationship, creating a new AttributeList, and add it as a child of the specified parent.
ContentItemWithValue(ContentItem, String, String, CodedSequenceItem) - Constructor for class com.pixelmed.dicom.ContentItemWithValue
Construct a content item of a specified type and relationship, creating a new AttributeList, and add it as a child of the specified parent.
contentLabel - Variable in class com.pixelmed.dicom.ColorPalette
 
ContentLabel - Static variable in class com.pixelmed.dicom.TagFromName
 
contentLabelStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotIron
 
contentLabelStatic - Static variable in class com.pixelmed.dicom.ColorPaletteHotMetalBlue
 
contentLabelStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET
 
contentLabelStatic - Static variable in class com.pixelmed.dicom.ColorPalettePET20Step
 
ContentQualification - Static variable in class com.pixelmed.dicom.TagFromName
 
ContentSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ContentTemplateSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
contentTime - Variable in class com.pixelmed.dicom.ProjectionXRayImageLibrary.ProjectionXRayImageLibraryEntry
 
ContentTime - Static variable in class com.pixelmed.dicom.TagFromName
 
ContextGroupExtensionCreatorUID - Static variable in class com.pixelmed.dicom.TagFromName
 
continuityOfContent - Variable in class com.pixelmed.dicom.ContentItemFactory.ContainerContentItem
 
ContinuityOfContent - Static variable in class com.pixelmed.dicom.TagFromName
 
ContourData - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusAdministrationRouteSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusAgent - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusAgentPhase - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusAgentSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusIngredient - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusIngredientConcentration - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusRoute - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusStartTime - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusStopTime - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusTotalDose - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusUsageSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastBolusVolume - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastFlowDuration - Static variable in class com.pixelmed.dicom.TagFromName
 
ContrastFlowRate - Static variable in class com.pixelmed.dicom.TagFromName
 
ContributingEquipmentSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ContributionDescription - Static variable in class com.pixelmed.dicom.TagFromName
 
ConversionSourceAttributesSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
ConversionType - Static variable in class com.pixelmed.dicom.TagFromName
 
Convert8To16Bits - Class in com.pixelmed.apps
A class of methods to convert 8 to 16 bit gray scale images.
Convert8To16Bits(String, String, int) - Constructor for class com.pixelmed.apps.Convert8To16Bits
Read a DICOM 8 bit grayscale image input format file and change the bit depth.
convertAmicasFiles(String, String) - Method in class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom
Read an amicas-patients folder, and then convert any image files within.
ConvertAmicasJPEG2000FilesetToDicom - Class in com.pixelmed.convert
This class provides conversion of a set of Amicas JPEG 2000 files to DICOM.
ConvertAmicasJPEG2000FilesetToDicom() - Constructor for class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom
Construct an converter that will looked for files in the system default path.
ConvertAmicasJPEG2000FilesetToDicom(String) - Constructor for class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom
Construct an converter that will looked for files in the specified path.
ConvertAmicasJPEG2000FilesetToDicom.OnlyDirectoriesFileFilter - Class in com.pixelmed.convert
Instances of this class select only Files that are directories.
ConvertAmicasJPEG2000FilesetToDicom.OnlySuffixFilenameFilter - Class in com.pixelmed.convert
Instances of this class select only File names that end with the specified suffix.
convertFileToEightBitImage(String, String, String) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertFileToEightBitImage(String, String, String, double, double, int, int, int, String) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertFileToEightBitImage(String, String, String, double, double, int, int, int, int, int, int, int, int, int, String) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertFileToEightBitImage(String, String, String, double, double, int, int, int, String, Vector<SuperimposedImage>, double, Vector<Shape>[]) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertFileToEightBitImage(String, String, String, double, double, int, int, int, String, Vector<SuperimposedImage>, Vector<Shape>[]) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertFileToEightBitImage(String, String, String, double, double, int, int, int, int, int, int, int, int, int, String, Vector<SuperimposedImage>, Vector<Shape>[]) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertFileToEightBitImage(String, String, String, double, double, int, int, int, int, int, int, int, int, int, String, Vector<SuperimposedImage>, double, Vector<Shape>[]) - Static method in class com.pixelmed.display.ConsumerFormatImageMaker
Read a DICOM image input file, and create single frame 8-bit per channel images (windowed if grayscale) from the only or all frames.
convertGenericLateralityToBreastSpecificLaterality(DisplayableLateralityConcept) - Static method in class com.pixelmed.anatproc.MammographyLaterality
 
convertGenericLateralityToBreastSpecificLaterality(CodedSequenceItem) - Static method in class com.pixelmed.anatproc.MammographyLaterality
 
convertImages(Set<File>, File) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create a new set of instances, converting to enhanced images when possible, from a set of DICOM files.
convertImages(File[], File) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create a new set of instances, converting to enhanced images when possible, from a set of DICOM files.
convertImages(String[], String) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create a new set of instances, converting to enhanced images when possible, from a set of DICOM files.
ConvertNonRGBToRGB - Class in com.pixelmed.apps
A class of static methods to convert non-RGB (e.g., YBR_FULL) to RGB true color images.
ConvertNonRGBToRGB(String, String) - Constructor for class com.pixelmed.apps.ConvertNonRGBToRGB
Read a DICOM color image input format file and change the photometric interpretation of the the encoded pixel data to RGB.
ConvertPaletteColorToGrayscale - Class in com.pixelmed.apps
A class of static methods to convert PALETTE COLOR to MONOCHROME2 images.
ConvertPaletteColorToGrayscale(String, String) - Constructor for class com.pixelmed.apps.ConvertPaletteColorToGrayscale
Read a DICOM image input format file with a Photometric Interpretation of PALETTE COLOR, and from it create a DICOM image of Photometric Interpretation MONOCHROME2.
ConvertPlanarConfiguration - Class in com.pixelmed.apps
A class of static methods to convert the planar configuration of a multiple samples per pixel image, i.e., to change color-by-plane to color-by-pixel or vice versa.
ConvertPlanarConfiguration(String, String) - Constructor for class com.pixelmed.apps.ConvertPlanarConfiguration
Read a DICOM color image input format file and change the planar configuration of the encoded pixel data.
convertToMostFavorableImageType(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertToMostFavorableImageTypeWithBandCombineOp(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertToMostFavorableImageTypeWithDataBufferCopy(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertToMostFavorableImageTypeWithGraphicsDraw(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertToMostFavorableImageTypeWithPixelCopy(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertToThreeChannelImageTypeIfFour(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertYBRToRGB(byte, byte, byte, byte[]) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
convertYBRToRGB(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
CoordinateCategoryMammoBreastDensity - Static variable in class com.pixelmed.dicom.SpatialCoordinateAndImageReference
 
CoordinateCategoryMammoCalcificationCluster - Static variable in class com.pixelmed.dicom.SpatialCoordinateAndImageReference
 
CoordinateCategoryMammoIndividualCalcification - Static variable in class com.pixelmed.dicom.SpatialCoordinateAndImageReference
 
CoordinateCategoryUnspecified - Static variable in class com.pixelmed.dicom.SpatialCoordinateAndImageReference
 
COPIED_FROM_IMAGE_ATTRIBUTES - Static variable in class com.pixelmed.dose.SourceOfDoseInformation
 
copy(int, InputStream, OutputStream, long) - Static method in class com.pixelmed.utils.CopyStream
Copy the specified number of bytes from the current position of the input stream to an output stream.
copy(InputStream, OutputStream, long) - Static method in class com.pixelmed.utils.CopyStream
Copy the specified number of bytes from the current position of the input stream to an output stream.
copy(int, InputStream, OutputStream) - Static method in class com.pixelmed.utils.CopyStream
Copy an entire input stream to an output stream.
copy(InputStream, OutputStream) - Static method in class com.pixelmed.utils.CopyStream
Copy an entire input stream to an output stream.
copy(File, File, int, int, int) - Static method in class com.pixelmed.utils.CopyStream
Copy an entire input file to an output file.
copy(String, String, int, int, int) - Static method in class com.pixelmed.utils.CopyStream
Copy an entire input file to an output file.
copy(File, File) - Static method in class com.pixelmed.utils.CopyStream
Copy an entire input file to an output file.
copy(String, String) - Static method in class com.pixelmed.utils.CopyStream
Copy an entire input file to an output file.
copyByteSwapped(int, InputStream, OutputStream, long) - Static method in class com.pixelmed.utils.CopyStream
Copy the specified even number of bytes from the current position of the input stream to an output stream, swapping adjacent pairs of bytes.
copyByteSwapped(InputStream, OutputStream, long) - Static method in class com.pixelmed.utils.CopyStream
Copy the specified even number of bytes from the current position of the input stream to an output stream, swapping adjacent pairs of bytes.
copyFromOriginalToCleanedPerformingAction(Vector, Date, MessageLogger, SafeProgressBarUpdaterThread) - Method in class com.pixelmed.display.DicomCleaner
 
copyFunctionalGroupsSequenceWithDownsampledValues(AttributeList, AttributeList, TiledFramesIndex, int, int, int, int, int, int) - Static method in class com.pixelmed.apps.TiledPyramid
 
CopyOnlyHeadOfMultipleStructuredReportsAndReferences - Class in com.pixelmed.apps
A class to process multiple SR files and their referenced instances (like Presentation States and Segmentations) and copy only the head (most recent) of the Predecessor Documents sequence chain and its references, ignoring earlier (obsolete) SR files and earlier references.
CopyOnlyHeadOfMultipleStructuredReportsAndReferences(String[], String) - Constructor for class com.pixelmed.apps.CopyOnlyHeadOfMultipleStructuredReportsAndReferences
Copy only the most recent SR files and their references.
CopyOnlyHeadOfMultipleStructuredReportsAndReferences.OurMediaImporter - Class in com.pixelmed.apps
 
COPYRIGHT - Static variable in class com.pixelmed.convert.TIFFTags
 
copySignedIntToDoubleArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in int, into an array of double.
copySignedIntToFloatArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in int, into an array of float.
copySignedIntToLongArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in int, into an array of long.
copySignedIntToShortArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in int, into an array of short.
copySignedLongToDoubleArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in long, into an array of double.
copySignedLongToFloatArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in long, into an array of float.
copySignedLongToIntArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in long, into an array of int.
copySignedLongToShortArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in long, into an array of short.
copySignedShortToDoubleArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in short, into an array of double.
copySignedShortToFloatArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in short, into an array of float.
copySignedShortToIntArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in short, into an array of int.
copySignedShortToLongArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of signed values in short, into an array of long.
CopyStream - Class in com.pixelmed.utils
A class for copying an entire input stream to an output stream.
copyStringArrayRemovingLeadingAndTrailingPadding(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy a string removing leading and trailing padding.
copyStringToDoubleArray(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Extract decimal values from an array of strings into an array of double.
copyStringToFloatArray(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Extract decimal values from an array of strings into an array of float.
copyStringToIntArray(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Extract integer values from an array of strings into an array of int.
copyStringToLongArray(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Extract long values from an array of strings into an array of int.
copyStringToShortArray(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Extract short values from an array of strings into an array of short.
copyUnsignedIntToDoubleArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in int, into an array of double.
copyUnsignedIntToFloatArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in int, into an array of float.
copyUnsignedIntToLongArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in int, into an array of long.
copyUnsignedIntToShortArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in int, into an array of short.
copyUnsignedLongToDoubleArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in long, into an array of double.
copyUnsignedLongToFloatArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in long, into an array of float.
copyUnsignedLongToIntArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in long, into an array of int.
copyUnsignedLongToShortArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in long, into an array of short.
copyUnsignedShortToDoubleArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in short, into an array of double.
copyUnsignedShortToFloatArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in short, into an array of float.
copyUnsignedShortToIntArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in short, into an array of int.
copyUnsignedShortToLongArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Copy an array of unsigned values in short, into an array of long.
CornealTopographyMapStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
CORONAL_LABEL - Static variable in class com.pixelmed.dicom.DescriptionFactory
 
correctDecompressedImagePixelModule(boolean) - Method in class com.pixelmed.dicom.AttributeList
Correct the PhotometricInterpretation and Planar Configuration iff pixel data in a compressed input transfer syntax was actually decompressed during reading of AttributeList or will be if compressed frames are decompressed.
correctDecompressedImagePixelModule() - Method in class com.pixelmed.dicom.AttributeList
Correct the PhotometricInterpretation and Planar Configuration iff pixel data in a compressed input transfer syntax was actually decompressed during reading of AttributeList or will be if compressed frames are decompressed.
CorrectedImage - Static variable in class com.pixelmed.dicom.TagFromName
 
correctImageOrientationPatient(AttributeList, int, boolean) - Static method in class com.pixelmed.apps.RotateFlipSetOfImages
 
correctPatientOrientation(AttributeList, int, boolean) - Static method in class com.pixelmed.apps.RotateFlipSetOfImages
 
count - Variable in class com.pixelmed.dicom.CompressedFrameDecoder.ByteArrayInputStreamWithOffsetCounterAndOurMethods
 
countUp(int) - Method in class com.pixelmed.transfermonitor.TransferMonitor
 
countUp(long) - Method in class com.pixelmed.transfermonitor.TransferMonitor
 
createAdditionalIndexes() - Method in class com.pixelmed.database.DatabaseInformationModel
Create any additional indexes to optimize queries, for example for UIDs.
createAdditionalIndexes() - Method in class com.pixelmed.database.MinimalPatientStudySeriesInstanceModel
Create additional indexes on UIDs to optimize queries.
createAdditionalIndexes() - Method in class com.pixelmed.database.PatientStudySeriesConcatenationInstanceModel
Create additional indexes on UIDs to optimize queries.
createBandInterleavedByteThreeComponentColorImage(int, int, byte[], int, ColorSpace) - Static method in class com.pixelmed.display.SourceImage
 
createCineSliderIfNecessary(int, int, int) - Method in class com.pixelmed.display.DicomImageBlackout
 
createContextForNewRadiationDoseStructuredReportFromExistingInstance(AttributeList, CTDose, CTIrradiationEventDataFromImages) - Static method in class com.pixelmed.doseocr.GenerateRadiationDoseStructuredReport
 
createDicomImageFileFromAmicasImageFile(File, String, String, String, AttributeList, AttributeList, AttributeList, AttributeList) - Method in class com.pixelmed.convert.ConvertAmicasJPEG2000FilesetToDicom
 
createDICOMInstance(String, String, String) - Method in class com.pixelmed.dicom.ColorPalette
Create a DICOM color palette storage instance from the palette characteristics.
createDocumentAndWriteIt(AttributeList, OutputStream) - Static method in class com.pixelmed.dicom.XMLRepresentationOfDicomObjectFactory
Serialize an XML document (DOM tree) created from a DICOM attribute list.
createDocumentAndWriteIt(AttributeList, OutputStream) - Static method in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
Serialize an XML document (DOM tree) created from a DICOM Structured Report.
createDocumentAndWriteIt(StructuredReport, OutputStream) - Static method in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
Serialize an XML document (DOM tree) created from a DICOM Structured Report.
createDocumentAndWriteIt(StructuredReport, AttributeList, OutputStream) - Static method in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
Serialize an XML document (DOM tree) created from a DICOM Structured Report.
createDownsampledDICOMAttributes(AttributeList, AttributeList, TiledFramesIndex, String, boolean, boolean) - Static method in class com.pixelmed.apps.TiledPyramid
 
createDownsampledDICOMFile(File, File) - Method in class com.pixelmed.apps.TiledPyramid
 
createEnhancedImageFromFrameSet(FrameSet, Map<String, File>, Map<String, AttributeList>, Map<String, HierarchicalImageReference>, Map<String, StackOfSlices>) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create an enhanced image from a set of DICOM single image files or AttributeLists in a FrameSet.
createEnhancedImageFromFrameSet(FrameSet, Map<String, File>, Map<String, AttributeList>, Map<String, HierarchicalImageReference>) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create an enhanced image from a set of DICOM single image files or AttributeLists in a FrameSet.
createEnhancedImageFromFrameSet(FrameSet, File, Map<String, File>, Map<String, HierarchicalImageReference>, Map<String, StackOfSlices>) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create an enhanced image from a set of DICOM single image files in a FrameSet.
createEnhancedImageFromFrameSet(FrameSet, File, Map<String, File>, Map<String, HierarchicalImageReference>) - Static method in class com.pixelmed.dicom.MultiFrameImageFactory
Create an enhanced image from a set of DICOM single image files in a FrameSet.
createExcludeLists() - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
createFullNameByTag() - Method in class com.pixelmed.dicom.DicomDictionary
 
createFullNameByTag() - Method in class com.pixelmed.dicom.DicomDictionaryBase
Concrete sub-classes implement this method to create a map of attribute full names from tags for each tag in the dictionary.
createFunctionalGroupsIfNotPresent(AttributeList, int) - Static method in class com.pixelmed.dicom.FunctionalGroupUtilities
Create shared and per-frame functional group sequences if not already present.
createGUI() - Method in class com.pixelmed.display.ApplicationFrame
Do what is necessary to build an application window.
createGUI(String, int, int, boolean, boolean, boolean, String) - Method in class com.pixelmed.display.DialogMessageLogger
Construct the GUI for a slf4jlogger.
createInformationEntityByTag() - Method in class com.pixelmed.dicom.DicomDictionary
 
createInformationEntityByTag() - Method in class com.pixelmed.dicom.DicomDictionaryBase
Concrete sub-classes implement this method to create a map of information entities for each tag in the dictionary.
createNameByTag() - Method in class com.pixelmed.dicom.DicomDictionary
 
createNameByTag() - Method in class com.pixelmed.dicom.DicomDictionaryBase
Concrete sub-classes implement this method to create a map of attribute names from tags for each tag in the dictionary.
createNewAssociation(String, int, String, String, int, int, int, LinkedList, LinkedList, boolean, String, String) - Static method in class com.pixelmed.network.AssociationFactory
Opens a transport connection and initiates an association.
createNewAssociation(String, int, String, String, LinkedList, LinkedList, boolean) - Static method in class com.pixelmed.network.AssociationFactory
Opens a transport connection and initiates an association.
createNewAssociation(String, int, String, String, LinkedList, LinkedList, boolean, String, String) - Static method in class com.pixelmed.network.AssociationFactory
Opens a transport connection and initiates an association.
createNewAssociation(Socket, String, int, int, int, PresentationContextSelectionPolicy) - Static method in class com.pixelmed.network.AssociationFactory
Accepts an association on the supplied open transport connection.
createNewAssociation(Socket, String, PresentationContextSelectionPolicy) - Static method in class com.pixelmed.network.AssociationFactory
Accepts an association on the supplied open transport connection.
createNewPresentationContextList(String, String, int, boolean, boolean, boolean) - Static method in class com.pixelmed.network.PresentationContextListFactory
Create lists of presentation contexts for initiating associations, from the specified abstract syntax and transfer syntax as well as all supported transfer syntaxes.
createNewPresentationContextList(String, String, int) - Static method in class com.pixelmed.network.PresentationContextListFactory
Create lists of presentation contexts for initiating associations, from the specified abstract syntax and transfer syntax as well as all supported transfer syntaxes.
createNewPresentationContextList(Set<String>, int, boolean, boolean) - Static method in class com.pixelmed.network.PresentationContextListFactory
Create lists of presentation contexts for initiating associations, from a set of SOP Class UIDs.
createNewPresentationContextList(Set<String>, int) - Static method in class com.pixelmed.network.PresentationContextListFactory
Create lists of presentation contexts for initiating associations, from a set of SOP Class UIDs.
createNewPresentationContextList(SetOfDicomFiles, int, boolean, boolean, boolean) - Static method in class com.pixelmed.network.PresentationContextListFactory
Create lists of presentation contexts for initiating associations, from the abstract syntax and transfer syntax as well as all supported transfer syntaxes for all the files in the specified set of Dicom files.
createNewPresentationContextList(SetOfDicomFiles, int) - Static method in class com.pixelmed.network.PresentationContextListFactory
Create lists of presentation contexts for initiating associations, from the abstract syntax and transfer syntax as well as all supported transfer syntaxes for all the files in the specified set of Dicom files.
createNewPseudonymousPatientAndAddToMaps(String, String) - Method in class com.pixelmed.apps.PseudonymizeAndSequester
Create a new PatientID and PatientName and them to the maps.
createOIDFromUUIDCanonicalHexString(String) - Static method in class com.pixelmed.utils.UUIDBasedOID
Create an OID from the canonical hex string form of a UUID.
createPerformedProcedureCodeSequenceIfAbsent(AttributeList) - Method in class com.pixelmed.dicom.CompositeInstanceContext
 
createPixelInterleavedByteThreeComponentColorImage(int, int, byte[], int, ColorSpace, boolean) - Static method in class com.pixelmed.display.SourceImage
 
createPrimaryKeyForSelectedInformationEntity(InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Create a new unique key which may be used to identify a new instance of an entity.
createPrimaryKeyForSelectedInformationEntity(InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
 
createReferencedRequestSequenceIfAbsent(AttributeList) - Method in class com.pixelmed.dicom.CompositeInstanceContext
 
createSharedFunctionalGroupsIfNotPresent(AttributeList) - Static method in class com.pixelmed.dicom.FunctionalGroupUtilities
Create shared functional group sequences if not already present.
createTagByName() - Method in class com.pixelmed.dicom.DicomDictionary
 
createTagByName() - Method in class com.pixelmed.dicom.DicomDictionaryBase
Concrete sub-classes implement this method to create a map of tags from attribute names for each tag in the dictionary.
createTagList() - Method in class com.pixelmed.database.DicomDictionaryForMinimalPatientStudySeriesInstanceModel
 
createTagList() - Method in class com.pixelmed.database.DicomDictionaryForPatientStudySeriesConcatenationInstanceModel
 
createTagList() - Method in class com.pixelmed.database.DicomDictionaryForStudySeriesInstanceModel
 
createTagList() - Method in class com.pixelmed.dicom.DicomDictionary
 
createTagList() - Method in class com.pixelmed.dicom.DicomDictionaryBase
Concrete sub-classes implement this method to create a list of all tags in the dictionary.
createValueRepresentationsByTag() - Method in class com.pixelmed.dicom.DicomDictionary
 
createValueRepresentationsByTag() - Method in class com.pixelmed.dicom.DicomDictionaryBase
Concrete sub-classes implement this method to create a map of value representations for each tag in the dictionary.
createWorker() - Method in class com.pixelmed.web.HttpServer
 
createWorker() - Method in class com.pixelmed.web.RequestTypeServer
 
createWorker() - Method in class com.pixelmed.web.WadoServer
 
CreatorVersionUID - Static variable in class com.pixelmed.dicom.TagFromName
 
CRIT - Static variable in class com.pixelmed.utils.Syslog
 
CRON - Static variable in class com.pixelmed.utils.Syslog
 
crop - Variable in class com.pixelmed.display.DisplayedAreaSelection
 
CrossSectionalImageLibrary - Class in com.pixelmed.dicom
 
CrossSectionalImageLibrary() - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary
 
CrossSectionalImageLibrary(AttributeList) - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary
 
CrossSectionalImageLibrary(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary
 
CrossSectionalImageLibrary(Set<File>) - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary
 
CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry - Class in com.pixelmed.dicom
 
CrossSectionalImageLibraryEntry(ContentItemFactory.ImageContentItem, Map<String, HierarchicalSOPInstanceReference>) - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
 
CrossSectionalImageLibraryEntry(AttributeList) - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
 
CrossSectionalImageLibraryEntry(HierarchicalImageReference, String, GeometryOfSlice) - Constructor for class com.pixelmed.dicom.CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
 
CS - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
CStoreRequestCommandMessage - Class in com.pixelmed.network
 
CStoreRequestCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CStoreRequestCommandMessage
 
CStoreRequestCommandMessage(String, String) - Constructor for class com.pixelmed.network.CStoreRequestCommandMessage
 
CStoreRequestCommandMessage(String, String, String, int) - Constructor for class com.pixelmed.network.CStoreRequestCommandMessage
 
CStoreResponseCommandMessage - Class in com.pixelmed.network
 
CStoreResponseCommandMessage(AttributeList) - Constructor for class com.pixelmed.network.CStoreResponseCommandMessage
 
CStoreResponseCommandMessage(String, String, int, int) - Constructor for class com.pixelmed.network.CStoreResponseCommandMessage
 
CTAcquisitionParameters - Class in com.pixelmed.dose
 
CTAcquisitionParameters(String, CTScanType, CodedSequenceItem, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class com.pixelmed.dose.CTAcquisitionParameters
 
CTAcquisitionParameters(String, CTScanType, CodedSequenceItem, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class com.pixelmed.dose.CTAcquisitionParameters
 
CTAcquisitionParameters(CTAcquisitionParameters) - Constructor for class com.pixelmed.dose.CTAcquisitionParameters
 
CTAcquisitionParameters(ContentItem) - Constructor for class com.pixelmed.dose.CTAcquisitionParameters
 
CTAcquisitionTypeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
CTAnatomy - Class in com.pixelmed.anatproc
This class encapsulates information pertaining to anatomy of CT images.
CTAnatomy() - Constructor for class com.pixelmed.anatproc.CTAnatomy
 
CTDIvol - Variable in class com.pixelmed.dose.CTDoseAcquisition
 
CTDose - Class in com.pixelmed.dose
 
CTDose(StructuredReport) - Constructor for class com.pixelmed.dose.CTDose
 
CTDose(StructuredReport, AttributeList) - Constructor for class com.pixelmed.dose.CTDose
 
CTDose(AttributeList) - Constructor for class com.pixelmed.dose.CTDose
 
CTDose(String, int, ScopeOfDoseAccummulation, String, String, String, String) - Constructor for class com.pixelmed.dose.CTDose
 
CTDose(String, String, int, ScopeOfDoseAccummulation, String, String, String, String) - Constructor for class com.pixelmed.dose.CTDose
 
CTDose(ScopeOfDoseAccummulation, String, String, String, String) - Constructor for class com.pixelmed.dose.CTDose
 
CTDoseAcquisition - Class in com.pixelmed.dose
 
CTDoseAcquisition(String, boolean, String, CTScanType, ScanRange, String, String, CTPhantomType) - Constructor for class com.pixelmed.dose.CTDoseAcquisition
 
CTDoseAcquisition(String, ContentItem) - Constructor for class com.pixelmed.dose.CTDoseAcquisition
 
CTDoseCheckDetails - Class in com.pixelmed.dose
 
CTDoseCheckDetails(boolean, String, boolean, String, String, String, String, PersonParticipant, boolean, String, boolean, String, String, String, String, PersonParticipant) - Constructor for class com.pixelmed.dose.CTDoseCheckDetails
 
CTDoseCheckDetails(ContentItem) - Constructor for class com.pixelmed.dose.CTDoseCheckDetails
 
CTExposureSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
CTImageFrameTypeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
CTImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
CTIrradiationEventDataFromImages - Class in com.pixelmed.dose
 
CTIrradiationEventDataFromImages() - Constructor for class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
CTIrradiationEventDataFromImages(String) - Constructor for class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
CTIrradiationEventDataFromImages(Vector<String>) - Constructor for class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
CTPhantomType - Class in com.pixelmed.dose
 
CTPositionSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
CTReconstructionSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
CTScanType - Class in com.pixelmed.dose
 
CTTableDynamicsSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
CTXRayDetailsSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
currentDatabaseTreeRecordSelections - Variable in class com.pixelmed.apps.DoseUtility
 
currentDatabaseTreeRecordSelections - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentDate - Variable in class com.pixelmed.test.TestPatientAgeWhenRemoveIdentifyingAttributes
 
currentDestinationDatabaseSelections - Variable in class com.pixelmed.display.DicomCleaner
 
currentDestinationFilePathSelections - Variable in class com.pixelmed.display.DicomCleaner
 
currentFileName - Variable in class com.pixelmed.display.DicomImageBlackout
 
currentFileNumber - Variable in class com.pixelmed.display.DicomImageBlackout
 
CURRENTICCPROFILE - Static variable in class com.pixelmed.convert.TIFFTags
 
currentLocationIn3DSpace - Variable in class com.pixelmed.display.SingleImagePanel
This value is outside mouseMoved() only so that it doesn't need to be constantly reallocated - it is not used by any other method
CURRENTPREPROFILEMATRIX - Static variable in class com.pixelmed.convert.TIFFTags
 
currentRemoteQueryInformationModel - Variable in class com.pixelmed.apps.DoseUtility
 
currentRemoteQueryInformationModel - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentRemoteQueryInformationModel - Variable in class com.pixelmed.display.DicomCleaner
 
currentRemoteQuerySelectionLevel - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentRemoteQuerySelectionLevel - Variable in class com.pixelmed.display.DicomCleaner
 
currentRemoteQuerySelectionQueryTreeRecord - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentRemoteQuerySelectionQueryTreeRecord - Variable in class com.pixelmed.display.DicomCleaner
 
currentRemoteQuerySelectionRetrieveAE - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentRemoteQuerySelectionRetrieveAE - Variable in class com.pixelmed.display.DicomCleaner
 
currentRemoteQuerySelectionUniqueKey - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentRemoteQuerySelectionUniqueKey - Variable in class com.pixelmed.display.DicomCleaner
 
currentRemoteQuerySelectionUniqueKeys - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
currentRemoteQuerySelectionUniqueKeys - Variable in class com.pixelmed.display.DicomCleaner
 
currentRemoteQueryTreeBrowser - Variable in class com.pixelmed.apps.DoseUtility
 
currentRemoteQueryTreeBrowser - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
CurrentRequestedProcedureEvidenceSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
currentSourceDatabaseSelections - Variable in class com.pixelmed.display.DicomCleaner
 
currentSourceFilePathSelections - Variable in class com.pixelmed.display.DicomCleaner
 
cursor - Variable in class com.pixelmed.display.SafeCursorChanger.SafeCursorGetterThread
 
cursor - Variable in class com.pixelmed.display.SafeCursorChanger.SafeCursorSetterThread
 
cursorChanger - Variable in class com.pixelmed.apps.DoseUtility
 
cursorChanger - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
cursorChanger - Variable in class com.pixelmed.display.DicomCleaner
 
cursorChanger - Variable in class com.pixelmed.display.DicomImageViewer
 

D

DA - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
DAEMON - Static variable in class com.pixelmed.utils.Syslog
 
data - Variable in class com.pixelmed.database.MapTableModel
 
data - Variable in class com.pixelmed.dicom.AttributeListTableModel
 
DATABASE - Static variable in class com.pixelmed.display.event.BrowserPaneChangeEvent
 
DatabaseApplicationProperties - Class in com.pixelmed.database
This class provides common support to applications requiring properties related to database services.
DatabaseApplicationProperties(Properties) - Constructor for class com.pixelmed.database.DatabaseApplicationProperties
Extract the DICOM network properties from the supplied properties.
databaseConnection - Variable in class com.pixelmed.database.DatabaseInformationModel
 
databaseInformationModel - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
databaseInformationModel - Variable in class com.pixelmed.apps.MultiModalitySimulator
 
databaseInformationModel - Variable in class com.pixelmed.apps.StudyReceiver
 
DatabaseInformationModel - Class in com.pixelmed.database
The DatabaseInformationModel class is an abstract class that contains the core functionality for storing, accessing and maintaining a persistent representation of selected attributes of composite objects.
DatabaseInformationModel(String, InformationEntity, DicomDictionary) - Constructor for class com.pixelmed.database.DatabaseInformationModel
Instantiate a persistent information model using the named database.
DatabaseInformationModel(String, InformationEntity, DicomDictionary, String) - Constructor for class com.pixelmed.database.DatabaseInformationModel
Instantiate a persistent information model using the named database.
DatabaseInformationModel(String, String, InformationEntity, DicomDictionary) - Constructor for class com.pixelmed.database.DatabaseInformationModel
Instantiate a persistent information model using the named database allowing external SQL access.
DatabaseInformationModel(String, String, InformationEntity, DicomDictionary, String) - Constructor for class com.pixelmed.database.DatabaseInformationModel
Instantiate a persistent information model using the named database allowing external SQL access.
databaseInformationModel - Variable in class com.pixelmed.database.DatabaseMediaImporter
 
databaseInformationModel - Variable in class com.pixelmed.server.DicomAndWebStorageServer
 
databaseInformationModel - Variable in class com.pixelmed.test.TestCMove.OurReceivedObjectHandler
 
DatabaseMediaImporter - Class in com.pixelmed.database
 
DatabaseMediaImporter(String, File, DatabaseInformationModel, MessageLogger) - Constructor for class com.pixelmed.database.DatabaseMediaImporter
 
DatabaseMediaImporter(String, File, StoredFilePathStrategy, DatabaseInformationModel, MessageLogger) - Constructor for class com.pixelmed.database.DatabaseMediaImporter
 
databaseRootName - Variable in class com.pixelmed.database.DatabaseInformationModel
 
DatabaseTreeBrowser - Class in com.pixelmed.database
The DatabaseTreeBrowser class implements a Swing graphical user interface to browse the contents of DatabaseInformationModel.
DatabaseTreeBrowser(DatabaseInformationModel, JScrollPane, JScrollPane) - Constructor for class com.pixelmed.database.DatabaseTreeBrowser
Build and display a graphical user interface view of a database information model.
DatabaseTreeBrowser(DatabaseInformationModel, JFrame) - Constructor for class com.pixelmed.database.DatabaseTreeBrowser
Build and display a graphical user interface view of a database information model.
DatabaseTreeBrowser(DatabaseInformationModel, Container) - Constructor for class com.pixelmed.database.DatabaseTreeBrowser
Build and display a graphical user interface view of a database information model.
DatabaseTreeModel - Class in com.pixelmed.database
The DatabaseTreeModel class implements a TreeModel to abstract the contents of a database as a tree in order to provide support for a DatabaseTreeBrowser.
DatabaseTreeModel(DatabaseInformationModel) - Constructor for class com.pixelmed.database.DatabaseTreeModel
Construct a tree model of the supplied database.
DatabaseTreeRecord - Class in com.pixelmed.database
Instances of the DatabaseTreeRecord class represent nodes in a tree of the DatabaseTreeModel class, which in turn is used by the DatabaseTreeBrowser class.
DatabaseTreeRecord(DatabaseInformationModel, DatabaseTreeRecord, String, InformationEntity, String, String) - Constructor for class com.pixelmed.database.DatabaseTreeRecord
Make a new node in a tree.
DatabaseTreeRecord(DatabaseInformationModel, DatabaseTreeRecord, String, InformationEntity, String, String, String) - Constructor for class com.pixelmed.database.DatabaseTreeRecord
Make a new node in a tree.
databaseTreeScrollPane - Variable in class com.pixelmed.display.DicomImageViewer
 
DataPointColumns - Static variable in class com.pixelmed.dicom.TagFromName
 
DataPointRows - Static variable in class com.pixelmed.dicom.TagFromName
 
dataReceived - Variable in class com.pixelmed.network.CompositeResponseHandler
 
DataRepresentation - Static variable in class com.pixelmed.dicom.TagFromName
 
DataSetTrailingPadding - Static variable in class com.pixelmed.dicom.TagFromName
 
datatype - Variable in class com.pixelmed.convert.AnalyzeHeader
 
datatype - Variable in class com.pixelmed.convert.NIfTI1Header
 
DATATYPE - Static variable in class com.pixelmed.convert.TIFFTags
 
datatype_code - Variable in class com.pixelmed.convert.AnalyzeHeader
 
datatype_code - Variable in class com.pixelmed.convert.NIfTI1Header
 
Date - Static variable in class com.pixelmed.dicom.TagFromName
 
DateAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Date (DT) attributes.
DateAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.DateAttribute
Construct an (empty) attribute.
DateAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.DateAttribute
Read an attribute from an input stream.
DateAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.DateAttribute
Read an attribute from an input stream.
DateContentItem(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemFactory.DateContentItem
 
DateContentItem(ContentItem, String, CodedSequenceItem, String, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.DateContentItem
 
DateContentItem(ContentItem, String, CodedSequenceItem, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.DateContentItem
 
dateFormatter - Variable in class com.pixelmed.display.DialogMessageLogger
 
dateFormatter - Variable in class com.pixelmed.slf4j.Logger
 
DateOfLastCalibration - Static variable in class com.pixelmed.dicom.TagFromName
 
DateOfSecondaryCapture - Static variable in class com.pixelmed.dicom.TagFromName
 
DATETIME - Static variable in class com.pixelmed.convert.TIFFTags
 
DateTime - Static variable in class com.pixelmed.dicom.TagFromName
 
DateTimeAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Date Time (DT) attributes.
DateTimeAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.DateTimeAttribute
Construct an (empty) attribute.
DateTimeAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.DateTimeAttribute
Read an attribute from an input stream.
DateTimeAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.DateTimeAttribute
Read an attribute from an input stream.
DateTimeContentItem(ContentItem, AttributeList) - Constructor for class com.pixelmed.dicom.ContentItemFactory.DateTimeContentItem
 
DateTimeContentItem(ContentItem, String, CodedSequenceItem, String, String, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.DateTimeContentItem
 
DateTimeContentItem(ContentItem, String, CodedSequenceItem, String) - Constructor for class com.pixelmed.dicom.ContentItemFactory.DateTimeContentItem
 
DateTimeRangeMatch - Class in com.pixelmed.database
 
DateUtilities - Class in com.pixelmed.utils
Various static methods helpful for handling dates.
daysBackwardsFromTodayToQuery - Static variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
DCM - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
DCMUID - Static variable in class com.pixelmed.dicom.CodingSchemeIdentification
 
DCSHUESHIFTVALUES - Static variable in class com.pixelmed.convert.TIFFTags
 
deActivateDiscovery() - Method in class com.pixelmed.network.NetworkApplicationProperties.OurNetworkConfigurationSource
 
deActivateDiscovery() - Method in class com.pixelmed.network.NetworkConfigurationFromLDAP
 
deActivateDiscovery() - Method in class com.pixelmed.network.NetworkConfigurationFromMulticastDNS
Stop DNS Self-Discovery.
deActivateDiscovery() - Method in class com.pixelmed.network.NetworkConfigurationSource
Stop discovery.
deActivateDumper() - Method in class com.pixelmed.network.NetworkConfigurationSource
Stop dumping current configuration information.
debug(String) - Method in class com.pixelmed.slf4j.Logger
Log a message at the DEBUG level.
debug(String, Object...) - Method in class com.pixelmed.slf4j.Logger
Log a message at the DEBUG level.
debug(String, Throwable) - Method in class com.pixelmed.slf4j.Logger
Log an exception (throwable) at the DEBUG level with an accompanying message.
DEBUG - Static variable in class com.pixelmed.utils.Syslog
 
debugEnabled - Variable in class com.pixelmed.slf4j.Logger
 
DecayCorrection - Static variable in class com.pixelmed.dicom.TagFromName
 
DecimalStringAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Decimal String (DS) attributes.
DecimalStringAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.DecimalStringAttribute
Construct an (empty) attribute.
DecimalStringAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.DecimalStringAttribute
Read an attribute from an input stream.
DecimalStringAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.DecimalStringAttribute
Read an attribute from an input stream.
DECODE - Static variable in class com.pixelmed.convert.TIFFTags
 
decode(InputStream, OutputStream, int) - Static method in class com.pixelmed.dicom.UnPackBits
 
decode(InputStream) - Static method in class com.pixelmed.dicom.UnPackBits
 
decode(byte[]) - Static method in class com.pixelmed.dicom.UnPackBits
 
decode(InputStream, byte[], int, int) - Static method in class com.pixelmed.dicom.UnPackBits
 
decode() - Method in class com.pixelmed.scpecg.HuffmanDecoder
Decode a single value.
decode(int) - Method in class com.pixelmed.scpecg.HuffmanDecoder
Decode a specified number of values.
decodePage(int) - Method in class com.pixelmed.utils.PdfDecoder
 
DecompressDicomFiles - Class in com.pixelmed.apps
This class copies a set of DICOM files, decompressing them if compressed.
DecompressDicomFiles(MessageLogger) - Constructor for class com.pixelmed.apps.DecompressDicomFiles
 
decompressPixelData - Variable in class com.pixelmed.dicom.AttributeList
 
deconstruct() - Method in class com.pixelmed.display.DicomImageBlackout
 
deconstruct() - Method in class com.pixelmed.display.SingleImagePanel
 
deconstruct() - Method in class com.pixelmed.display.SpectraPanel
 
deconstructAllSingleImagePanelsInContainer(Container) - Static method in class com.pixelmed.display.SingleImagePanel
 
deconstructAllSpectraPanelsInContainer(Container) - Static method in class com.pixelmed.display.SpectraPanel
 
deducePixelMagnificationRatioFromSpacing - Variable in class com.pixelmed.display.DisplayedAreaSelection
 
Default - Static variable in class com.pixelmed.dicom.TransferSyntax
 
default_CheckBoxAcceptAnyTransferSyntaxIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxAddContributingEquipmentIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxCleanUIDsIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxHierarchicalExportIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxModifyDatesIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveAllStructuredContentIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveCharacteristicsIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveClinicalTrialAttributesIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveDescriptionsIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveDeviceIdentityIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveIdentityIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveInstitutionIdentityIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemovePrivateIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveProtocolNameIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveSeriesDescriptionsIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxRemoveUnsafeStructuredContentIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxReplaceAccessionNumberIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxReplacePatientIDIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxReplacePatientNameIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
default_CheckBoxZipExportIsSelected - Static variable in class com.pixelmed.display.DicomCleaner
 
DEFAULT_CLOSEST_SLICE_TOLERANCE_DISTANCE - Static variable in class com.pixelmed.display.SuperimposedImage
 
default_DateTimeFormat - Static variable in class com.pixelmed.display.DicomCleaner
 
DEFAULT_ICON_SIZE - Static variable in class com.pixelmed.display.IconListBrowser
 
default_RandomReplacementAccessionNumberLength - Static variable in class com.pixelmed.display.DicomCleaner
 
default_RandomReplacementPatientIDLength - Static variable in class com.pixelmed.display.DicomCleaner
 
default_ShowDateTime - Static variable in class com.pixelmed.display.DicomCleaner
 
defaultAlternativeSubfolder - Static variable in class com.pixelmed.dicom.StoredFilePathStrategy
 
defaultAnatomy - Variable in class com.pixelmed.dose.CTDose
 
defaultCompletedStudiesFolderName - Variable in class com.pixelmed.apps.StudyReceiver
 
DEFAULTCROPORIGIN - Static variable in class com.pixelmed.convert.TIFFTags
 
DEFAULTCROPSIZE - Static variable in class com.pixelmed.convert.TIFFTags
 
defaultDatabaseRootName - Static variable in class com.pixelmed.database.DatabaseInformationModel
 
defaultDaysBackwardsFromTodayToQuery - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultDicomCurrentlySelectedStorageTargetAE - Variable in class com.pixelmed.apps.ProcessReceivedWholeSlideImagesMakeTiledPyramidAndSend
 
DefaultDumpInfoInterval - Static variable in class com.pixelmed.network.NetworkConfigurationSource
 
defaultDuplicatesFolderNamePrefix - Static variable in class com.pixelmed.dicom.MoveDicomFilesIntoHierarchy
 
defaultEarliestDateInSet - Static variable in class com.pixelmed.apps.PseudonymizeAndSequester
 
defaultFileNameOfKnownGlyphs - Static variable in class com.pixelmed.doseocr.OCR
 
defaultHierarchicalFolderName - Static variable in class com.pixelmed.dicom.MoveDicomFilesIntoHierarchy
 
DefaultHuffmanTable - Class in com.pixelmed.scpecg
A class for constructing the default Huffman Table specified in the SCP-ECG standard.
DefaultHuffmanTable() - Constructor for class com.pixelmed.scpecg.DefaultHuffmanTable
Construct a default Huffman Table.
defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultIntervalAfterLastInstanceReceivedToWaitBeforeProcessingStudy - Variable in class com.pixelmed.apps.StudyReceiver
 
defaultNumberOfWorkers - Static variable in class com.pixelmed.web.HttpServer
 
defaultPropertiesFileName - Static variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultPropertiesFileName - Static variable in class com.pixelmed.apps.InstanceReceiver
 
defaultPropertiesFileName - Static variable in class com.pixelmed.apps.StudyReceiver
 
defaultPyramidImagesFolderName - Variable in class com.pixelmed.apps.ProcessReceivedWholeSlideImagesMakeTiledPyramidAndSend
 
DefaultReplacementActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.DefaultReplacementActionListener
 
defaultRetainDeidentifiedFiles - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultRetainGeneratedRDSRFiles - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultRetainSourceFilesUsedForSRGeneration - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultSavedImagesFolderName - Variable in class com.pixelmed.apps.InstanceReceiver
 
DEFAULTSCALE - Static variable in class com.pixelmed.convert.TIFFTags
 
defaultSleepIntervalMultiplier - Variable in class com.pixelmed.apps.MultiModalitySimulator
 
defaultSleepTimeBetweenPassesToProcessReceivedFiles - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
defaultSleepTimeBetweenPassesToProcessReceivedFiles - Variable in class com.pixelmed.apps.StudyReceiver
 
defaultSleepTimeBetweenPassesToQueryRemoteAEs - Variable in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
DefaultSourceRefreshInterval - Static variable in class com.pixelmed.network.NetworkConfigurationSource
 
DefaultStatusNotificationHandler() - Constructor for class com.pixelmed.display.DicomImageBlackout.DefaultStatusNotificationHandler
 
defaultValueForMissingNonZeroLengthStrings - Static variable in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
defaultValueForMissingPossiblyZeroLengthStrings - Static variable in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
DefaultWADOPort - Static variable in class com.pixelmed.network.NetworkDefaultValues
 
DefaultYearActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.DefaultYearActionListener
 
deferredDecompression - Variable in class com.pixelmed.display.DicomImageBlackout
 
DeflatedExplicitVRLittleEndian - Static variable in class com.pixelmed.dicom.TransferSyntax
 
DeformableSpatialRegistrationStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DeidentificationMethod - Static variable in class com.pixelmed.dicom.TagFromName
 
DeidentificationMethodCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DeidentifyAndRedact - Class in com.pixelmed.apps
A class to implement bulk de-identification and redaction of DICOM files.
DeidentifyAndRedact(String, String, String, boolean, boolean, boolean, AttributeList) - Constructor for class com.pixelmed.apps.DeidentifyAndRedact
Read DICOM format image files, de-identify them and apply any specified redactions to the Pixel Data.
DeidentifyAndRedact(String, String, String, boolean, boolean, AttributeList) - Constructor for class com.pixelmed.apps.DeidentifyAndRedact
Read DICOM format image files, de-identify them and apply any specified redactions to the Pixel Data.
DeidentifyAndRedact(String, String, String, boolean, boolean, boolean) - Constructor for class com.pixelmed.apps.DeidentifyAndRedact
Read DICOM format image files, de-identify them and apply any specified redactions to the Pixel Data.
DeidentifyAndRedact(String, String, String, boolean, boolean) - Constructor for class com.pixelmed.apps.DeidentifyAndRedact
Read DICOM format image files, de-identify them and apply any specified redactions to the Pixel Data.
DeidentifyAndRedact.OurMediaImporter - Class in com.pixelmed.apps
A protected class that actually does all the work of finding and processing the files.
DeidentifyAndRedact.RedactionRegions - Class in com.pixelmed.apps
A protected class to store sets of rectangular redaction regions indexed by a String classname.
DeidentifyAndRedactWithOriginalFileName - Class in com.pixelmed.apps
 
DeidentifyAndRedactWithOriginalFileName(String, String, String, boolean, boolean, boolean, AttributeList) - Constructor for class com.pixelmed.apps.DeidentifyAndRedactWithOriginalFileName
 
DeidentifyAndRedactWithOriginalFileName(String, String, String, boolean, boolean, AttributeList) - Constructor for class com.pixelmed.apps.DeidentifyAndRedactWithOriginalFileName
 
DeidentifyAndRedactWithOriginalFileName(String, String, String, boolean, boolean, boolean) - Constructor for class com.pixelmed.apps.DeidentifyAndRedactWithOriginalFileName
 
DeidentifyAndRedactWithOriginalFileName(String, String, String, boolean, boolean) - Constructor for class com.pixelmed.apps.DeidentifyAndRedactWithOriginalFileName
 
deidentifyFile(String) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
deidentifyFiles(Vector<String>) - Method in class com.pixelmed.apps.DoseUtility
 
deidentifyWhenSendingToRegistryCheckBox - Variable in class com.pixelmed.apps.DoseUtility
 
deidentifyWhenSendingToRegistryLabelText - Static variable in class com.pixelmed.apps.DoseUtility
 
deleteFiles(SetOfDicomFiles) - Static method in class com.pixelmed.apps.MultiModalitySimulator
 
deleteFilesAndDatabaseRecords(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile>) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
deleteFilesAndSetDatabaseRecordsToReferenced(Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile>) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
deleteFilesWhenNoLongerNeeded - Variable in class com.pixelmed.dicom.OtherAttributeOnDisk
 
deleteFilesWhenNoLongerNeeded() - Method in class com.pixelmed.dicom.OtherAttributeOnDisk
 
deleteFilesWhenNoLongerNeeded - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleFilesOnDisk
 
deleteFilesWhenNoLongerNeeded() - Method in class com.pixelmed.dicom.OtherByteAttributeMultipleFilesOnDisk
 
deleteFilesWhenNoLongerNeeded - Variable in class com.pixelmed.dicom.OtherWordAttributeMultipleFilesOnDisk
 
deleteFilesWhenNoLongerNeeded() - Method in class com.pixelmed.dicom.OtherWordAttributeMultipleFilesOnDisk
 
DeleteFromDatabase - Class in com.pixelmed.database
This class provides methods for removing entries from a database, all its children and any associated files that were copied into the database (rather than referenced).
DeleteFromDatabase() - Constructor for class com.pixelmed.database.DeleteFromDatabase
 
deleteRecord(InformationEntity, String) - Method in class com.pixelmed.database.DatabaseInformationModel
Delete a database record (a particular instance of an information entity).
deleteRecordChildrenAndFilesByLocalPrimaryKey(DatabaseInformationModel, InformationEntity, String) - Static method in class com.pixelmed.database.DeleteFromDatabase
Remove the database entry, all its children and any copied files.
deleteRecordChildrenAndFilesByUniqueKey(DatabaseInformationModel, String, String) - Static method in class com.pixelmed.database.DeleteFromDatabase
 
deleteRecordChildrenAndFilesByUniqueKey(DatabaseInformationModel, InformationEntity, String) - Static method in class com.pixelmed.database.DeleteFromDatabase
Remove the database entry, all its children and any copied files.
DemographicAndTechniqueAnnotations - Class in com.pixelmed.display
A class to extract selected DICOM annotative attributes into defined displayed area relative positions.
DemographicAndTechniqueAnnotations(AttributeList) - Constructor for class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
DemographicAndTechniqueAnnotations(AttributeList, GeometryOfVolume) - Constructor for class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
DemographicAndTechniqueAnnotations(AttributeList, GeometryOfVolume, boolean) - Constructor for class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
DemographicAndTechniqueAnnotations.AnnotationLayoutConfigurationEntry - Class in com.pixelmed.display
 
DerivationCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DerivationDescription - Static variable in class com.pixelmed.dicom.TagFromName
 
DerivationImageSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DERIVED_FROM_HUMAN_READABLE_REPORTS - Static variable in class com.pixelmed.dose.SourceOfDoseInformation
 
derivedAcquisitionDateTimeColumnName - Static variable in class com.pixelmed.database.DicomDatabaseInformationModel
 
derivedContentDateTimeColumnName - Static variable in class com.pixelmed.database.DicomDatabaseInformationModel
 
derivedLossyImageCompressionColumnName - Static variable in class com.pixelmed.database.DicomDatabaseInformationModel
 
derivedSeriesDateTimeColumnName - Static variable in class com.pixelmed.database.DicomDatabaseInformationModel
 
derivedStudyDateTimeColumnName - Static variable in class com.pixelmed.database.DicomDatabaseInformationModel
 
deriveScanDateTimeFromHalfLifeAcquisitionDateTimeFrameReferenceTimeAndActualFrameDuration(AttributeList) - Static method in class com.pixelmed.dicom.SUVTransform
 
deriveScanningLengthFromDLPAndCTDIVolIfGreater(String, String) - Method in class com.pixelmed.dose.CTAcquisitionParameters
 
describeColorModel(ColorModel, PrintStream) - Static method in class com.pixelmed.display.BufferedImageUtilities
Describe characteristics of ColorModel.
describeColorModel(ColorModel) - Static method in class com.pixelmed.display.BufferedImageUtilities
Describe characteristics of ColorModel.
DescribeGraphicsEnvironment - Class in com.pixelmed.display
This class describes the graphics environment (number and type and size of displays).
DescribeGraphicsEnvironment() - Constructor for class com.pixelmed.display.DescribeGraphicsEnvironment
 
describeImage(BufferedImage, PrintStream) - Static method in class com.pixelmed.display.BufferedImageUtilities
Describe characteristics of BufferedImage's Raster, SampleModel, ColorModel, etc.
describeImage(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
Describe characteristics of BufferedImage's Raster, SampleModel, ColorModel, etc.
describeIPAddress(InetAddress) - Static method in class com.pixelmed.network.ProbeCapability
 
describeLossyCompression(AttributeList) - Static method in class com.pixelmed.dicom.LossyImageCompression
Describe the nature of lossy compressed that has ever been applied to an image.
describeMissingValues(int) - Static method in class com.pixelmed.scpecg.Section
Get a description of measurement values that may have missing values.
describeRaster(Raster, PrintStream) - Static method in class com.pixelmed.display.BufferedImageUtilities
Describe characteristics of Raster.
describeRaster(Raster) - Static method in class com.pixelmed.display.BufferedImageUtilities
Describe characteristics of Raster.
describeUndefinedOrMissingValues(int) - Static method in class com.pixelmed.scpecg.Section7
Get a description of measurement values that may have undefined or missing values.
description - Variable in class com.pixelmed.convert.AnalyzeHeader
 
description - Variable in class com.pixelmed.convert.NIfTI1Header
 
Description(int, String) - Constructor for class com.pixelmed.convert.TIFFTags.Description
 
description - Variable in class com.pixelmed.dicom.PixelSpacing
 
description - Variable in class com.pixelmed.dicom.TransferSyntax
 
description - Variable in class com.pixelmed.dose.CTDose
 
DescriptionFactory - Class in com.pixelmed.dicom
A class of static methods to provide descriptions of images, including image orientation relative to the patient from the mathematical position and orientation attributes, and including other descriptive attributes such as from dicom directory records and images using multi-frame functional groups.
DescriptionFactory() - Constructor for class com.pixelmed.dicom.DescriptionFactory
 
descriptionOfConcept - Variable in class com.pixelmed.anatproc.DictionaryOfConcepts
 
descriptions - Static variable in class com.pixelmed.convert.TIFFTags
 
DetailSRStorageTrialRetired - Static variable in class com.pixelmed.dicom.SOPClass
 
determineMediaTypeFromFile(String) - Static method in class com.pixelmed.convert.EncapsulateData
 
determineModalityFromSOPClass(String) - Static method in class com.pixelmed.convert.EncapsulateData
 
determineSOPClassFromMediaType(String) - Static method in class com.pixelmed.convert.EncapsulateData
 
DeviceParticipant - Class in com.pixelmed.dose
 
DeviceParticipant(String, String, String, String) - Constructor for class com.pixelmed.dose.DeviceParticipant
 
DeviceParticipant(ContentItem) - Constructor for class com.pixelmed.dose.DeviceParticipant
 
DeviceSerialNumber - Static variable in class com.pixelmed.dicom.TagFromName
 
DialogMessageLogger - Class in com.pixelmed.display
A class to write log and status messages to a scrolling text area in a dialog box.
DialogMessageLogger(String, int, int, boolean) - Constructor for class com.pixelmed.display.DialogMessageLogger
Construct a logger and make it immediately visible.
DialogMessageLogger(String, int, int, boolean, boolean) - Constructor for class com.pixelmed.display.DialogMessageLogger
Construct a slf4jlogger.
DialogMessageLogger(String, int, int, boolean, boolean, boolean, String) - Constructor for class com.pixelmed.display.DialogMessageLogger
Construct a slf4jlogger.
DialogMessageLogger.ClearActionListener - Class in com.pixelmed.display
 
DialogMessageLogger.CreateGUIRunnable - Class in com.pixelmed.display
 
DialogMessageLogger.SendRunnable - Class in com.pixelmed.display
 
DialogMessageLogger.SetVisibleRunnable - Class in com.pixelmed.display
 
dicomAETitle - Variable in class com.pixelmed.network.ApplicationEntity
 
dicomAETitleField - Variable in class com.pixelmed.network.ApplicationEntityConfigurationDialog
 
DicomAndWebStorageServer - Class in com.pixelmed.server
The DicomAndWebStorageServer implements a DICOM storage server with query and retrieval as well as an HTTP server that responds to web requests including WADO as well as an external SQL database access server.
DicomAndWebStorageServer(Properties) - Constructor for class com.pixelmed.server.DicomAndWebStorageServer
Wait for connections and process requests, storing received files in a database, using the default PatientStudySeriesConcatenationInstanceModel.
DicomAndWebStorageServer(Properties, DatabaseInformationModel) - Constructor for class com.pixelmed.server.DicomAndWebStorageServer
Wait for connections and process requests, storing received files in a database, using the specified database information model.
DicomBrowser - Class in com.pixelmed.display
A primitive DICOMDIR browsing application that will display images and structured reports, including marking up image coordinates and measurements on referenced images.
DicomBrowser() - Constructor for class com.pixelmed.display.DicomBrowser
Construct a browser.
DicomBrowser(String) - Constructor for class com.pixelmed.display.DicomBrowser
Construct a browser.
DicomBrowser(int) - Constructor for class com.pixelmed.display.DicomBrowser
Construct a browser.
DicomBrowser(String, int) - Constructor for class com.pixelmed.display.DicomBrowser
Construct a browser.
dicomCalculation - Static variable in class com.pixelmed.display.event.WindowLinearCalculationChangeEvent
 
DicomCleaner - Class in com.pixelmed.display
This class is an application for importing or retrieving DICOM studies, cleaning them (i.e., de-identifying them or replacing UIDs, etc.), and sending them elsewhere.
DicomCleaner() - Constructor for class com.pixelmed.display.DicomCleaner
 
DicomCleaner(String) - Constructor for class com.pixelmed.display.DicomCleaner
 
DicomCleaner.BlackoutActionListener - Class in com.pixelmed.display
 
DicomCleaner.CancelActionListener - Class in com.pixelmed.display
 
DicomCleaner.CleanActionListener - Class in com.pixelmed.display
 
DicomCleaner.CleanWorker - Class in com.pixelmed.display
 
DicomCleaner.ConfigureActionListener - Class in com.pixelmed.display
 
DicomCleaner.DefaultReplacementActionListener - Class in com.pixelmed.display
 
DicomCleaner.DefaultYearActionListener - Class in com.pixelmed.display
 
DicomCleaner.EarliestYearActionListener - Class in com.pixelmed.display
 
DicomCleaner.ExportActionListener - Class in com.pixelmed.display
 
DicomCleaner.ExportWorker - Class in com.pixelmed.display
 
DicomCleaner.ImportActionListener - Class in com.pixelmed.display
 
DicomCleaner.ImportWorker - Class in com.pixelmed.display
 
DicomCleaner.LogActionListener - Class in com.pixelmed.display
 
DicomCleaner.OurDestinationDatabaseTreeBrowser - Class in com.pixelmed.display
 
DicomCleaner.OurDicomImageBlackout - Class in com.pixelmed.display
 
DicomCleaner.OurDicomImageBlackout.ApplicationStatusChangeEventNotificationHandler - Class in com.pixelmed.display
 
DicomCleaner.OurMediaImporter - Class in com.pixelmed.display
 
DicomCleaner.OurMultipleInstanceTransferStatusHandler - Class in com.pixelmed.display
 
DicomCleaner.OurQueryTreeBrowser - Class in com.pixelmed.display
 
DicomCleaner.OurReceivedObjectHandler - Class in com.pixelmed.display
 
DicomCleaner.OurSourceDatabaseTreeBrowser - Class in com.pixelmed.display
 
DicomCleaner.PurgeActionListener - Class in com.pixelmed.display
 
DicomCleaner.PurgeWorker - Class in com.pixelmed.display
 
DicomCleaner.QueryActionListener - Class in com.pixelmed.display
 
DicomCleaner.QueryWorker - Class in com.pixelmed.display
 
DicomCleaner.RandomReplacementActionListener - Class in com.pixelmed.display
 
DicomCleaner.RandomYearActionListener - Class in com.pixelmed.display
 
DicomCleaner.RetrieveActionListener - Class in com.pixelmed.display
 
DicomCleaner.RetrieveWorker - Class in com.pixelmed.display
 
DicomCleaner.SendActionListener - Class in com.pixelmed.display
 
DicomCleaner.SendWorker - Class in com.pixelmed.display
 
DicomDatabaseInformationModel - Class in com.pixelmed.database
The DicomDatabaseInformationModel class is an abstract class that specializes DatabaseInformationModel by adding methods specific to a typical DICOM composite object information model.
DicomDatabaseInformationModel(String, InformationEntity, DicomDictionary) - Constructor for class com.pixelmed.database.DicomDatabaseInformationModel
 
DicomDatabaseInformationModel(String, InformationEntity, DicomDictionary, String) - Constructor for class com.pixelmed.database.DicomDatabaseInformationModel
 
DicomDatabaseInformationModel(String, String, InformationEntity, DicomDictionary) - Constructor for class com.pixelmed.database.DicomDatabaseInformationModel
 
DicomDatabaseInformationModel(String, String, InformationEntity, DicomDictionary, String) - Constructor for class com.pixelmed.database.DicomDatabaseInformationModel
 
DicomDictionary - Class in com.pixelmed.dicom
The DicomDictionary class is a complete standard dictionary of DICOM attributes and associated information.
DicomDictionary() - Constructor for class com.pixelmed.dicom.DicomDictionary
 
DicomDictionaryBase - Class in com.pixelmed.dicom
The DicomDictionaryBase class is an abstract class for creating and accessing a dictionary of DICOM attributes and associated information.
DicomDictionaryBase() - Constructor for class com.pixelmed.dicom.DicomDictionaryBase
Instantiate a dictionary by calling all create methods of the concrete sub-class.
DicomDictionaryForMinimalPatientStudySeriesInstanceModel - Class in com.pixelmed.database
The DicomDictionaryForMinimalPatientStudySeriesInstanceModel class supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.
DicomDictionaryForMinimalPatientStudySeriesInstanceModel() - Constructor for class com.pixelmed.database.DicomDictionaryForMinimalPatientStudySeriesInstanceModel
 
DicomDictionaryForPatientStudySeriesConcatenationInstanceModel - Class in com.pixelmed.database
The DicomDictionaryForPatientStudySeriesConcatenationInstanceModel class supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.
DicomDictionaryForPatientStudySeriesConcatenationInstanceModel() - Constructor for class com.pixelmed.database.DicomDictionaryForPatientStudySeriesConcatenationInstanceModel
 
DicomDictionaryForStudySeriesInstanceModel - Class in com.pixelmed.database
The DicomDictionaryForStudySeriesInstanceModel class supports a minimal DICOM Study/Series/Instance model.
DicomDictionaryForStudySeriesInstanceModel() - Constructor for class com.pixelmed.database.DicomDictionaryForStudySeriesInstanceModel
 
DICOMDIR - Static variable in class com.pixelmed.display.event.BrowserPaneChangeEvent
 
DicomDirectory - Class in com.pixelmed.dicom
 
DicomDirectory(String[]) - Constructor for class com.pixelmed.dicom.DicomDirectory
Create a new DicomDirectory from a list of existing DICOM files contained within the current working directory.
DicomDirectory(File, String[]) - Constructor for class com.pixelmed.dicom.DicomDirectory
Create a new DicomDirectory from a list of existing DICOM files contained within a specified root directory.
DicomDirectory() - Constructor for class com.pixelmed.dicom.DicomDirectory
Create an empty DicomDirectory
DicomDirectory(AttributeList) - Constructor for class com.pixelmed.dicom.DicomDirectory
Create a DicomDirectory from a DICOMDIR instance already read as an AttributeList
DicomDirectory(AttributeList, boolean) - Constructor for class com.pixelmed.dicom.DicomDirectory
Create a DicomDirectory from a DICOMDIR instance already read as an AttributeList, optionally creating synthetic concatenation records
DicomDirectoryBrowser - Class in com.pixelmed.dicom
 
DicomDirectoryBrowser(AttributeList, String) - Constructor for class com.pixelmed.dicom.DicomDirectoryBrowser
 
DicomDirectoryBrowser(AttributeList, String, JScrollPane, JScrollPane) - Constructor for class com.pixelmed.dicom.DicomDirectoryBrowser
 
DicomDirectoryBrowser(AttributeList, String, JFrame) - Constructor for class com.pixelmed.dicom.DicomDirectoryBrowser
 
DicomDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecord(DicomDirectoryRecord, AttributeList) - Constructor for class com.pixelmed.dicom.DicomDirectoryRecord
 
DicomDirectoryRecordFactory - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory() - Constructor for class com.pixelmed.dicom.DicomDirectoryRecordFactory
 
DicomDirectoryRecordFactory.ConcatenationDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.EncapsulatedDocumentDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.FiducialDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.HL7StructuredDocumentDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.ImageDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.KODocumentDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.PatientDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.PresentationStateDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RawDataDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RealWorldValueMappingDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RegistrationDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RTDoseDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RTPlanDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RTStructureSetDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.RTTreatmentRecordDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.SeriesDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.SpectroscopyDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.SRDocumentDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.StereometricRelationshipDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.StudyDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.TopDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.UnrecognizedDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordFactory.WaveformDirectoryRecord - Class in com.pixelmed.dicom
 
DicomDirectoryRecordType - Class in com.pixelmed.dicom
 
DicomDirectoryRecordType() - Constructor for class com.pixelmed.dicom.DicomDirectoryRecordType
 
dicomdirTreeScrollPane - Variable in class com.pixelmed.display.DicomImageViewer
 
DicomException - Exception in com.pixelmed.dicom
 
DicomException(String) - Constructor for exception com.pixelmed.dicom.DicomException
Constructs a new exception with the specified detail message.
DicomFile(String, String, String, String) - Constructor for class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
 
DicomFile(String, AttributeList) - Constructor for class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
 
DicomFile(String, AttributeList, boolean) - Constructor for class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
 
DicomFile(String) - Constructor for class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
Store a description a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
DicomFile(String, boolean) - Constructor for class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
Store a description a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
DicomFile(String, boolean, boolean) - Constructor for class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
Store a description a DICOM file by reading its metaheader, +/- entire attribute list, as necessary.
dicomFileNames - Variable in class com.pixelmed.display.DicomImageBlackout
 
DicomFileUtilities - Class in com.pixelmed.dicom
Various static methods helpful for handling DICOM files.
DicomImageBlackout - Class in com.pixelmed.display
This class displays images and allows the user to black out burned-in annotation, and save the result.
DicomImageBlackout(String[], DicomImageBlackout.StatusNotificationHandler, int) - Constructor for class com.pixelmed.display.DicomImageBlackout
Opens a window to display the supplied list of DICOM files to allow them to have burned in annotation blacked out.
DicomImageBlackout(String, String[], DicomImageBlackout.StatusNotificationHandler, int) - Constructor for class com.pixelmed.display.DicomImageBlackout
Opens a window to display the supplied list of DICOM files to allow them to have burned in annotation blacked out.
DicomImageBlackout.ApplyActionListener - Class in com.pixelmed.display
 
DicomImageBlackout.ApplySaveAllActionListener - Class in com.pixelmed.display
 
DicomImageBlackout.BurnedInAnnotationFlagAction - Class in com.pixelmed.display
A class of values for the Burned in Annotation action argument of the DicomImageBlackout() constructor.
DicomImageBlackout.CancelActionListener - Class in com.pixelmed.display
 
DicomImageBlackout.CenterMaximumAfterInitialSizeLayout - Class in com.pixelmed.display
 
DicomImageBlackout.CineSliderChangeListener - Class in com.pixelmed.display
 
DicomImageBlackout.DefaultStatusNotificationHandler - Class in com.pixelmed.display
A default status notification implementation, which just writes everything to stderr.
DicomImageBlackout.NextActionListener - Class in com.pixelmed.display
 
DicomImageBlackout.OverlaysChangeListener - Class in com.pixelmed.display
 
DicomImageBlackout.PixelPaddingBlackoutValueChangeListener - Class in com.pixelmed.display
 
DicomImageBlackout.PreviousActionListener - Class in com.pixelmed.display
 
DicomImageBlackout.SaveActionListener - Class in com.pixelmed.display
 
DicomImageBlackout.StatusNotificationHandler - Class in com.pixelmed.display
An abstract class for the user of to supply a callback notification method, supplied as an argument of the DicomImageBlackout() constructor.
DicomImageBlackout.ZeroBlackoutValueChangeListener - Class in com.pixelmed.display
 
DicomImageViewer - Class in com.pixelmed.display
This class is an entire application for displaying and viewing images and spectroscopy objects.
DicomImageViewer.DatabasePurgeWorker - Class in com.pixelmed.display
 
DicomImageViewer.ImportFromSelectionToDatabaseActionListener - Class in com.pixelmed.display
 
DicomInputStream - Class in com.pixelmed.dicom
A class that extends BinaryInputStream by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.
DicomInputStream(InputStream) - Constructor for class com.pixelmed.dicom.DicomInputStream
Construct a stream to read DICOM data sets from the supplied stream.
DicomInputStream(File) - Constructor for class com.pixelmed.dicom.DicomInputStream
Construct a stream to read DICOM data sets from the supplied stream.
DicomInputStream(InputStream, String, boolean) - Constructor for class com.pixelmed.dicom.DicomInputStream
Construct a stream to read DICOM data sets from the supplied stream.
DicomInputStream(File, String, boolean) - Constructor for class com.pixelmed.dicom.DicomInputStream
Construct a stream to read DICOM data sets from the supplied stream.
DicomInstanceValidator - Class in com.pixelmed.validate
The DicomInstanceValidator class is for validating composite storage SOP instances against the standard IOD for the corresponding storage SOP Class.
DicomInstanceValidator() - Constructor for class com.pixelmed.validate.DicomInstanceValidator
Create an instance of validator.
DicomNetworkException - Exception in com.pixelmed.network
 
DicomNetworkException(String) - Constructor for exception com.pixelmed.network.DicomNetworkException
 
DicomOutputStream - Class in com.pixelmed.dicom
A class that extends BinaryOutputStream by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.
DicomOutputStream(OutputStream, String, String) - Constructor for class com.pixelmed.dicom.DicomOutputStream
Construct a stream to write DICOM data sets to the supplied stream.
DicomOutputStream(OutputStream, String, String, byte[]) - Constructor for class com.pixelmed.dicom.DicomOutputStream
Construct a stream to write DICOM data sets to the supplied stream.
DicomSourceECG - Class in com.pixelmed.displaywave
A class that encapsulates the features and values from a DICOM ECG source, usually for the purpose of displaying it.
DicomSourceECG(BinaryInputStream) - Constructor for class com.pixelmed.displaywave.DicomSourceECG
Construct ECG from a DICOM waveform object from an input stream (such as from a file or the network).
DicomSourceECG(DicomInputStream) - Constructor for class com.pixelmed.displaywave.DicomSourceECG
Construct ECG from a DICOM waveform object from an input stream (such as from a file or the network).
DicomSourceECG(AttributeList) - Constructor for class com.pixelmed.displaywave.DicomSourceECG
Construct ECG from a DICOM waveform object from a list of DICOM attributes.
DicomSRValidator - Class in com.pixelmed.validate
The DicomSRValidator class is for validating SR instances against the standard IOD for the corresponding SOP Class.
DicomSRValidator() - Constructor for class com.pixelmed.validate.DicomSRValidator
Create an instance of validator.
DicomStreamCopier - Class in com.pixelmed.dicom
A class to copy DICOM attributes from anm input stream to an output stream, converting the encoding of the attributes between transfer syntaxes if necessary.
DicomStreamCopier(DicomInputStream, DicomOutputStream) - Constructor for class com.pixelmed.dicom.DicomStreamCopier
Copy a dicom input stream to a dicom output stream, using any meta information header if present in input, but not copying it.
DICONDEEddyCurrentImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DICONDEEddyCurrentMultiframeImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOS2DAITStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOS3DAITStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOSCTImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOSDigitalXRayImageStorageForPresentation - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOSDigitalXRayImageStorageForProcessing - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOSQuadrupoleResonanceStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
DICOSThreatDetectionReportStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
dictionary - Variable in class com.pixelmed.apps.SetCharacteristicsFromSummary
 
dictionary - Variable in class com.pixelmed.database.DatabaseInformationModel
 
dictionary - Static variable in class com.pixelmed.dicom.ClinicalTrialsAttributes
 
DictionaryOfConcepts - Class in com.pixelmed.anatproc
This class contains utility methods provide for the detection of concepts in various header attributes regardless of whether these are formal codes, code strings or free text comments.
DictionaryOfConcepts(DisplayableConcept[]) - Constructor for class com.pixelmed.anatproc.DictionaryOfConcepts
 
DictionaryOfConcepts(DisplayableConcept[], String[], String) - Constructor for class com.pixelmed.anatproc.DictionaryOfConcepts
 
digest(String, String) - Static method in class com.pixelmed.utils.FileUtilities
Return a message digest of a file.
digest(InputStream, String) - Static method in class com.pixelmed.utils.FileUtilities
Return a message digest of an InputStream.
DigitalImageFormatAcquired - Static variable in class com.pixelmed.dicom.TagFromName
 
DigitalIntraoralXRayImageStorageForPresentation - Static variable in class com.pixelmed.dicom.SOPClass
 
DigitalIntraoralXRayImageStorageForProcessing - Static variable in class com.pixelmed.dicom.SOPClass
 
DigitalMammographyXRayImageStorageForPresentation - Static variable in class com.pixelmed.dicom.SOPClass
 
DigitalMammographyXRayImageStorageForProcessing - Static variable in class com.pixelmed.dicom.SOPClass
 
DigitalXRayImageStorageForPresentation - Static variable in class com.pixelmed.dicom.SOPClass
 
DigitalXRayImageStorageForProcessing - Static variable in class com.pixelmed.dicom.SOPClass
 
DigitizingDeviceTransportDirection - Static variable in class com.pixelmed.dicom.TagFromName
 
dim - Variable in class com.pixelmed.convert.AnalyzeHeader
 
dim - Variable in class com.pixelmed.convert.NIfTI1Header
 
dim_info - Variable in class com.pixelmed.convert.NIfTI1Header
 
dim_un0 - Variable in class com.pixelmed.convert.AnalyzeHeader
 
DimensionDescriptionLabel - Static variable in class com.pixelmed.dicom.TagFromName
 
DimensionIndexPointer - Static variable in class com.pixelmed.dicom.TagFromName
 
DimensionIndexSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DimensionIndexValues - Static variable in class com.pixelmed.dicom.TagFromName
 
DimensionOrganizationSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DimensionOrganizationType - Static variable in class com.pixelmed.dicom.TagFromName
 
DimensionOrganizationUID - Static variable in class com.pixelmed.dicom.TagFromName
 
dimensions - Variable in class com.pixelmed.geometry.GeometryOfSlice
 
DIRECTIONVECTOR - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
directory - Variable in class com.pixelmed.ftp.FTPRemoteHost
 
directoryField - Variable in class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
 
DirectoryRecordSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DirectoryRecordType - Static variable in class com.pixelmed.dicom.TagFromName
 
dirty() - Method in class com.pixelmed.display.SingleImagePanel
 
dirty(SourceImage) - Method in class com.pixelmed.display.SingleImagePanel
 
dirtyPanned() - Method in class com.pixelmed.display.SingleImagePanel
 
dirtySource() - Method in class com.pixelmed.display.SingleImagePanel
 
dirtySource(SourceImage) - Method in class com.pixelmed.display.SingleImagePanel
 
dirtyWindowing() - Method in class com.pixelmed.display.SingleImagePanel
 
DisplayableAnatomicConcept - Class in com.pixelmed.anatproc
This class represents anatomic concepts that may be encoded and displayed.
DisplayableAnatomicConcept(String, String, boolean, String, String, String, String, String, String, String[], String[], String[]) - Constructor for class com.pixelmed.anatproc.DisplayableAnatomicConcept
Create an anatomic concept that may be encoded and displayed.
DisplayableAnatomicConcept() - Constructor for class com.pixelmed.anatproc.DisplayableAnatomicConcept
 
DisplayableConcept - Class in com.pixelmed.anatproc
This class represents a coded concept that may be displayed, for example as a menu item in a pick list.
DisplayableConcept(String, String, String, String, String, String, String, String, String[], String[], String[]) - Constructor for class com.pixelmed.anatproc.DisplayableConcept
Create a coded concept that may be displayed.
DisplayableConcept() - Constructor for class com.pixelmed.anatproc.DisplayableConcept
 
DisplayableLateralityConcept - Class in com.pixelmed.anatproc
This class represents laterality concepts that may be encoded and displayed.
DisplayableLateralityConcept(String, String, String, String, String, String, String, String, String[], String[], String[]) - Constructor for class com.pixelmed.anatproc.DisplayableLateralityConcept
Create a laterality concept that may be encoded and displayed.
DisplayableLateralityConcept() - Constructor for class com.pixelmed.anatproc.DisplayableLateralityConcept
 
DisplayableViewConcept - Class in com.pixelmed.anatproc
This class represents view position concepts that may be encoded and displayed.
DisplayableViewConcept(String, String, String, String, String, String, String, String, String[], String[], String[]) - Constructor for class com.pixelmed.anatproc.DisplayableViewConcept
Create a view position concept that may be encoded and displayed.
DisplayableViewConcept() - Constructor for class com.pixelmed.anatproc.DisplayableViewConcept
 
DisplayDeviceArea - Class in com.pixelmed.display
 
DisplayDeviceArea(GraphicsDevice, int, int, int, int) - Constructor for class com.pixelmed.display.DisplayDeviceArea
 
DisplayDeviceArea(GraphicsDevice) - Constructor for class com.pixelmed.display.DisplayDeviceArea
 
DisplayedAreaSelection - Class in com.pixelmed.display
A class to keep track of a selected sub-region of an image for the purposes of display.
displayListOfPossibleBackgroundImagesForSpectra - Variable in class com.pixelmed.display.DicomImageViewer
 
displayListOfPossibleReferenceImagesForImages - Variable in class com.pixelmed.display.DicomImageViewer
 
displayListOfPossibleReferenceImagesForSpectra - Variable in class com.pixelmed.display.DicomImageViewer
 
displayListOfPossibleReferenceImagesForTiledImages - Variable in class com.pixelmed.display.DicomImageViewer
 
displayReset() - Method in class com.pixelmed.display.SingleImagePanel
 
displaySelectedMagnificationRatio(double) - Method in class com.pixelmed.display.SingleImagePanel
 
displaySequence - Variable in class com.pixelmed.displaywave.SourceECG
 
DisplayShutter - Class in com.pixelmed.dicom
A set of display shutter parameters constructed from the attributes of the DICOM Display Shutter Module.
DisplayShutter(AttributeList) - Constructor for class com.pixelmed.dicom.DisplayShutter
Extract the display shutter paramaters from a list of attributes
DisplayStructuredReportBrowser - Class in com.pixelmed.display
 
DisplayStructuredReportBrowser(AttributeList, Map, int, int) - Constructor for class com.pixelmed.display.DisplayStructuredReportBrowser
 
DisplayStructuredReportBrowser(AttributeList, Map, int, int, String) - Constructor for class com.pixelmed.display.DisplayStructuredReportBrowser
 
dispose() - Method in class com.pixelmed.dicom.CompressedFrameDecoder
 
dispose() - Method in class com.pixelmed.display.DicomImageBlackout
 
DistanceSourceToDetector - Static variable in class com.pixelmed.dicom.TagFromName
 
DistanceSourceToPatient - Static variable in class com.pixelmed.dicom.TagFromName
 
DLP - Variable in class com.pixelmed.dose.CTDoseAcquisition
 
dlpSubTotals - Variable in class com.pixelmed.dose.CTDose
 
dlpTotal - Variable in class com.pixelmed.dose.CTDose
 
dlpTotalPhantom - Variable in class com.pixelmed.dose.CTDose
 
DNGBACKWARDVERSION - Static variable in class com.pixelmed.convert.TIFFTags
 
DNGPRIVATEDATA - Static variable in class com.pixelmed.convert.TIFFTags
 
DNGVERSION - Static variable in class com.pixelmed.convert.TIFFTags
 
dob - Variable in class com.pixelmed.test.TestPatientAgeWhenRemoveIdentifyingAttributes
 
doCommonConstructorStuff(DisplayableConcept[], String[], String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
doCommonConstructorStuff(String, String, InformationEntity, DicomDictionary, String) - Method in class com.pixelmed.database.DatabaseInformationModel
Instantiate a persistent information model using the named database.
doCommonConstructorStuff(String, int, int, int, int, ColorSpace) - Method in class com.pixelmed.dicom.CompressedFrameDecoder
 
doCommonConstructorStuff(String, String) - Method in class com.pixelmed.dicom.ContentItemFactory.CompositeContentItem
 
doCommonConstructorStuff(boolean, String, CodedSequenceItem, CodedSequenceItem, Double, Integer, Long) - Method in class com.pixelmed.dicom.ContentItemFactory.NumericContentItem
 
doCommonConstructorStuff() - Method in class com.pixelmed.display.MammoImageViewer
 
doCommonConstructorStuff(AttributeList, String, String) - Method in class com.pixelmed.doseocr.OCR
Perform OCR on the supplied image AttributeList.
doCommonConstructorStuff(AttributeList, BufferedImage, String, String) - Method in class com.pixelmed.doseocr.OCR
Perform OCR on the supplied image with AttributeList.
doCommonConstructorStuff(Component) - Method in class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
 
doCommonConstructorStuff() - Method in class com.pixelmed.geometry.LocalizerPoster
 
doCommonConstructorStuff(Component) - Method in class com.pixelmed.network.ApplicationEntityConfigurationDialog
 
doCommonConstructorStuff(Properties, DatabaseInformationModel) - Method in class com.pixelmed.server.DicomAndWebStorageServer
Wait for connections and process requests, storing received files in a database, using the specified database information model.
DocumentClassCodeSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
DOCUMENTNAME - Static variable in class com.pixelmed.convert.TIFFTags
 
DocumentTitle - Static variable in class com.pixelmed.dicom.TagFromName
 
done - Variable in class com.pixelmed.network.ProbeCapability.StringPermutationGenerator
 
done - Variable in class com.pixelmed.network.ReceivedDataHandler
 
DoneActionListener() - Constructor for class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.DoneActionListener
 
DoneActionListener() - Constructor for class com.pixelmed.network.NetworkApplicationConfigurationDialog.DoneActionListener
 
doNotFlipOrRotate - Variable in class com.pixelmed.display.MammoImageViewer
 
doNotJustify - Variable in class com.pixelmed.display.MammoImageViewer
 
doseCheckDetails - Variable in class com.pixelmed.dose.CTDoseAcquisition
 
DoseComment - Static variable in class com.pixelmed.dicom.TagFromName
 
DoseCompositeInstanceContext - Class in com.pixelmed.dose
 
DoseCompositeInstanceContext() - Constructor for class com.pixelmed.dose.DoseCompositeInstanceContext
 
DoseCompositeInstanceContext(AttributeList) - Constructor for class com.pixelmed.dose.DoseCompositeInstanceContext
 
DoseReporterWithLegacyOCRAndAutoSendToRegistry - Class in com.pixelmed.apps
A class to wait for incoming dose screen images and SRs and send them to pre-configured registry.
DoseReporterWithLegacyOCRAndAutoSendToRegistry(String) - Constructor for class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
Wait for incoming dose screen images and SRs and send to registry.
DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile - Class in com.pixelmed.apps
 
DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurPatientStudySeriesInstanceModel - Class in com.pixelmed.apps
 
DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurReceivedObjectHandler - Class in com.pixelmed.apps
 
DoseReporterWithLegacyOCRAndAutoSendToRegistry.ReceivedFileProcessor - Class in com.pixelmed.apps
 
DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchDatabaseAndSendToRegistry - Class in com.pixelmed.apps
 
DoseReporterWithLegacyOCRAndAutoSendToRegistry.WatchRemoteAEsForNewDoseInformation - Class in com.pixelmed.apps
 
DoseSummationType - Static variable in class com.pixelmed.dicom.TagFromName
 
DoseUtility - Class in com.pixelmed.apps
This class is an application for retrieving dose information about DICOM studies of patients.
DoseUtility(String) - Constructor for class com.pixelmed.apps.DoseUtility
 
DoseUtility.ConfigureActionListener - Class in com.pixelmed.apps
 
DoseUtility.ImportActionListener - Class in com.pixelmed.apps
 
DoseUtility.ImportWorker - Class in com.pixelmed.apps
 
DoseUtility.LogActionListener - Class in com.pixelmed.apps
 
DoseUtility.MakeSRActionListener - Class in com.pixelmed.apps
 
DoseUtility.MakeSRWorker - Class in com.pixelmed.apps
 
DoseUtility.OurMediaImporter - Class in com.pixelmed.apps
 
DoseUtility.OurMultipleInstanceTransferStatusHandler - Class in com.pixelmed.apps
 
DoseUtility.OurQueryTreeBrowser - Class in com.pixelmed.apps
 
DoseUtility.OurReceivedObjectHandler - Class in com.pixelmed.apps
 
DoseUtility.OurSourceDatabaseTreeBrowser - Class in com.pixelmed.apps
 
DoseUtility.PurgeActionListener - Class in com.pixelmed.apps
 
DoseUtility.PurgeWorker - Class in com.pixelmed.apps
 
DoseUtility.QueryActionListener - Class in com.pixelmed.apps
 
DoseUtility.QueryWorker - Class in com.pixelmed.apps
 
DoseUtility.RegistryActionListener - Class in com.pixelmed.apps
 
DoseUtility.RegistryWorker - Class in com.pixelmed.apps
 
DoseUtility.ReportActionListener - Class in com.pixelmed.apps
 
DoseUtility.ReportWorker - Class in com.pixelmed.apps
 
DoseUtility.RetrieveActionListener - Class in com.pixelmed.apps
 
DoseUtility.SendActionListener - Class in com.pixelmed.apps
 
DoseUtility.SendWorker - Class in com.pixelmed.apps
 
DoseUtility.ValidateActionListener - Class in com.pixelmed.apps
 
DoseUtility.ValidateWorker - Class in com.pixelmed.apps
 
DoseUtility.ViewActionListener - Class in com.pixelmed.apps
 
DoseUtility.ViewWorker - Class in com.pixelmed.apps
 
DOSIMETER - Static variable in class com.pixelmed.dose.SourceOfDoseInformation
 
doSomethingMoreWithWhateverWasSelected() - Method in class com.pixelmed.apps.DoseUtility.OurSourceDatabaseTreeBrowser
 
doSomethingMoreWithWhateverWasSelected() - Method in class com.pixelmed.apps.DownloadOrTransmit.OurSourceDatabaseTreeBrowser
 
doSomethingMoreWithWhateverWasSelected() - Method in class com.pixelmed.database.DatabaseTreeBrowser
Will be called when a double-click event is detected unless buildMouseListenerToDetectDoubleClickEvents is overriden to do something else.
doSomethingMoreWithWhateverWasSelected() - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.AddHierarchicalEvidenceSequencetoStructuredReports.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.CheckAllUIDReferencesResolve.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.CompressDicomFiles
Compress the DICOM file.
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.CopyOnlyHeadOfMultipleStructuredReportsAndReferences.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.DecompressDicomFiles
Do something with the referenced DICOM file that has been encountered.
doSomethingWithDicomFileOnMedia(String, String, String) - Method in class com.pixelmed.apps.DeidentifyAndRedact.OurMediaImporter
Deidentify both the DICOM Attributes and the Pixel Data using the RedactionRegions specified in the constructor.
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.DoseUtility.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.DownloadOrTransmit.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.FindAndCopySelectedDicomFiles
Do something with the referenced DICOM file that has been encountered.
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.InsertCodeSequence.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.InsertRealWorldValueMap.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.MergeCompositeContext.OurFirstPassMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.MergeCompositeContext.OurSecondPassMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.MergeCompositeContextForOneEntitySelectively.OurFirstPassMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.MergeCompositeContextForOneEntitySelectively.OurSecondPassMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.MergeFunctionalGroups.OurFirstPassMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.MergeFunctionalGroups.OurSecondPassMediaImporter
 
doSomethingWithDicomFileOnMedia(String, String, String) - Method in class com.pixelmed.apps.PseudonymizeAndSequester.OurMediaImporter
De-identify the DICOM Attributes and pseudonymize them and sequester if may have risk of identity leakage.
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.RemapFrameOfReferenceUIDs.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.RemapUIDs.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.RotateFlipSetOfImages.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.SetCharacteristicsFromSummary.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.TranslateImagePositionPatient.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.apps.UIDMapByMatchingPixelData.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.database.DatabaseMediaImporter
Makes a copy of the DICOM file in the temporary folder, reads the DICOM attributes to extract the necessary information and inserts a reference to the copied file in the database.
doSomethingWithDicomFileOnMedia(String, String, String) - Method in class com.pixelmed.dicom.MediaImporter
Do something with the referenced DICOM file that has been encountered.
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.dicom.MediaImporter
Do something with the referenced DICOM file that has been encountered.
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.display.DicomCleaner.OurMediaImporter
 
doSomethingWithDicomFileOnMedia(String) - Method in class com.pixelmed.network.NetworkMediaImporter
Adds the specified file name and its characteristics to the list to be transferred.
doSomethingWithIdentifier(AttributeList) - Method in class com.pixelmed.network.IdentifierHandler
Called when a response identifier has been received.
doSomethingWithIdentifier(AttributeList) - Method in class com.pixelmed.query.QueryTreeRecord.OurResponseIdentifierHandler
 
doSomethingWithProcessedDicomFile(String) - Method in class com.pixelmed.apps.StudyReceiver
Do something with the processed DICOM file.
doSomethingWithReceivedDicomFile(String, String, String, String) - Method in class com.pixelmed.apps.InstanceReceiver
Do something with the received DICOM file.
doSomethingWithReceivedDicomFile(String, String, String, String) - Method in class com.pixelmed.apps.ProcessReceivedWholeSlideImagesMakeTiledPyramidAndSend
Process any single high resolution tiled whole slide image received to produce a multi-resolution pyramid set of images.
doSomethingWithReceivedDicomFile(String, String, String, String) - Method in class com.pixelmed.apps.StudyReceiver
Do something with the received DICOM file.
doSomethingWithSelectedFiles(Vector) - Method in class com.pixelmed.database.DatabaseTreeBrowser
Will be called when a selection is made or changed and doSomethingWithSelections() returns false and not otherwise.
doSomethingWithSelectedFiles(Vector) - Method in class com.pixelmed.dicom.DicomDirectoryBrowser
 
doSomethingWithSelectedFiles(Vector) - Method in class com.pixelmed.display.DicomCleaner.OurDestinationDatabaseTreeBrowser
 
doSomethingWithSelectedFiles(Vector) - Method in class com.pixelmed.display.DicomCleaner.OurSourceDatabaseTreeBrowser
 
doSomethingWithSelectedSOPInstances(Vector) - Method in class com.pixelmed.display.DisplayStructuredReportBrowser
 
doSomethingWithSelections(DatabaseTreeRecord[]) - Method in class com.pixelmed.database.DatabaseTreeBrowser
Will be called when a selection is made or changed.
doSomethingWithSelections(DatabaseTreeRecord[]) - Method in class com.pixelmed.display.DicomCleaner.OurDestinationDatabaseTreeBrowser
 
doSomethingWithSelections(DatabaseTreeRecord[]) - Method in class com.pixelmed.display.DicomCleaner.OurSourceDatabaseTreeBrowser
 
doSomethingWithUnwantedFileOnMedia(String, String, String) - Method in class com.pixelmed.apps.CompressDicomFiles
Log that file cannot be compressed.
doSomethingWithUnwantedFileOnMedia(String, String, String) - Method in class com.pixelmed.dicom.MediaImporter
Do something with the unwanted (possibly DICOM file) that has been encountered.
DOTRANGE - Static variable in class com.pixelmed.convert.TIFFTags
 
DOUBLE - Static variable in class com.pixelmed.convert.TIFFTypes
 
DoubleFloatPixelData - Static variable in class com.pixelmed.dicom.TagFromName
 
DownloadOrTransmit - Class in com.pixelmed.apps
This class is an application for retrieving DICOM studies of patients and downloading or transmitting them.
DownloadOrTransmit(String) - Constructor for class com.pixelmed.apps.DownloadOrTransmit
 
DownloadOrTransmit.ConfigureActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.ExportActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.ExportWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.FtpSendActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.FtpSendWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.ImportActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.ImportWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.LogActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.OurMediaImporter - Class in com.pixelmed.apps
 
DownloadOrTransmit.OurMultipleInstanceTransferStatusHandler - Class in com.pixelmed.apps
 
DownloadOrTransmit.OurQueryTreeBrowser - Class in com.pixelmed.apps
 
DownloadOrTransmit.OurReceivedObjectHandler - Class in com.pixelmed.apps
 
DownloadOrTransmit.OurSourceDatabaseTreeBrowser - Class in com.pixelmed.apps
 
DownloadOrTransmit.PurgeActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.PurgeWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.QueryActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.QueryWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.RetrieveActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.RetrieveWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.SendActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.SendWorker - Class in com.pixelmed.apps
 
DownloadOrTransmit.ViewActionListener - Class in com.pixelmed.apps
 
DownloadOrTransmit.ViewWorker - Class in com.pixelmed.apps
 
downsamplePixelData(AttributeList, AttributeList, TiledFramesIndex, int, int, int, int, int, int, int, int, String, File[]) - Static method in class com.pixelmed.apps.TiledPyramid
 
drawHorizontallyCenteredString(String, boolean, Graphics2D, Component, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
DrawingUtilities - Class in com.pixelmed.display
A class to provide various static methods for drawing.
DrawingUtilities() - Constructor for class com.pixelmed.display.DrawingUtilities
 
drawLinesBetweenAnyPointsWhichIntersectPlaneWhereZIsZero(Point3d[]) - Method in class com.pixelmed.geometry.LocalizerPoster
 
drawOutlineOnLocalizer(Vector) - Method in class com.pixelmed.geometry.LocalizerPoster
 
drawOutlineOnLocalizer(Point3d[]) - Method in class com.pixelmed.geometry.LocalizerPoster
 
drawPositionedString(TextAnnotationPositioned, Graphics2D, Component, int, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
drawPositionedString(TextAnnotationPositioned, Graphics2D, int, int, int, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
drawPositionedString(TextAnnotationPositioned, Graphics2D, FontMetrics, int, int, int, int, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
drawPositionedString(String, boolean, boolean, int, Graphics2D, Component, int, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
drawPositionedString(String, boolean, boolean, int, Graphics2D, FontMetrics, int, int, int, int, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
drawShadowedShape(Shape, Graphics2D) - Static method in class com.pixelmed.display.DrawingUtilities
 
drawShadowedString(String, int, int, Graphics2D) - Static method in class com.pixelmed.display.DrawingUtilities
 
drawVerticallyCenteredString(String, boolean, Graphics2D, Component, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
drawVerticallyCenteredString(String, boolean, Graphics2D, Component, int, int) - Static method in class com.pixelmed.display.TextAnnotationPositioned
 
DS - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
dstDatabase - Variable in class com.pixelmed.display.DicomCleaner
 
dstDatabasePanel - Variable in class com.pixelmed.display.DicomCleaner
 
dstFolderName - Variable in class com.pixelmed.apps.InsertCodeSequence
 
dstFolderName - Variable in class com.pixelmed.apps.InsertRealWorldValueMap
 
dstFolderName - Variable in class com.pixelmed.apps.MergeCompositeContext
 
dstFolderName - Variable in class com.pixelmed.apps.MergeCompositeContextForOneEntitySelectively
 
dstFolderName - Variable in class com.pixelmed.apps.MergeFunctionalGroups
 
dstFolderName - Variable in class com.pixelmed.apps.RotateFlipSetOfImages
 
dstFolderName - Variable in class com.pixelmed.apps.SetCharacteristicsFromSummary
 
DT - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
dump() - Method in class com.pixelmed.database.DatabaseTreeRecord
Dump the contents of the node.
dump() - Method in class com.pixelmed.dicom.TransferSyntax
Describe the characteristics of Transfer Syntax.
dump(byte[], int, int) - Static method in class com.pixelmed.utils.HexDump
Create a dump of the decimal offset, hexadecimal values and printable string values of a byte array.
dump(byte[], int) - Static method in class com.pixelmed.utils.HexDump
Create a dump of the decimal offset, hexadecimal values and printable string values of a byte array.
dump(byte[]) - Static method in class com.pixelmed.utils.HexDump
Create a dump of the decimal offset, hexadecimal values and printable string values of a byte array.
dump(String, int, int) - Static method in class com.pixelmed.utils.HexDump
Create a dump of the decimal offset, hexadecimal values of the Unicode code points and printable string values of a String.
dump(String, int) - Static method in class com.pixelmed.utils.HexDump
Create a dump of the decimal offset, hexadecimal values of the Unicode code points and printable string values of a String.
dump(String) - Static method in class com.pixelmed.utils.HexDump
Create a dump of the decimal offset, hexadecimal values of the Unicode code points and printable string values of a String.
dump(String) - Static method in class com.pixelmed.utils.StringUtilities
Create a dump of the decimal offset, hexadecimal values and printable string values of a String.
dump(char[]) - Static method in class com.pixelmed.utils.StringUtilities
Create a dump of the decimal offset, hexadecimal values and printable string values of an array of char.
dumpAllFramesAndChildren(PrintStream, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpAllFramesAndChildren(PrintStream) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpAllOwnedWindows(Window, PrintStream, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpAllOwnedWindows(Window[], PrintStream, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpAllOwnedWindows(PrintStream, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpAllOwnedWindows(PrintStream) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpAttributeListFromCommandOrData(byte[], String) - Static method in class com.pixelmed.network.CompositeResponseHandler
Extract an AttributeList from the concatenated bytes that have been assembled from one or more PDUs and which make up an entire Command or Dataset.
dumpBufferCapabilities(BufferCapabilities, String, String) - Static method in class com.pixelmed.display.DescribeGraphicsEnvironment
 
dumpComponentAndChildren(Component, PrintStream, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpComponentAndChildren(Component, PrintStream) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpDisplayMode(DisplayMode, String, String) - Static method in class com.pixelmed.display.DescribeGraphicsEnvironment
 
dumper - Variable in class com.pixelmed.network.NetworkConfigurationSource
 
dumpGraphicsConfiguration(GraphicsConfiguration, String, String) - Static method in class com.pixelmed.display.DescribeGraphicsEnvironment
 
dumpGraphicsDevice(GraphicsDevice, String, String) - Static method in class com.pixelmed.display.DescribeGraphicsEnvironment
 
dumpGraphicsEnvironment(GraphicsEnvironment, String, String) - Static method in class com.pixelmed.display.DescribeGraphicsEnvironment
 
dumpGroups() - Method in class com.pixelmed.apps.MergeCompositeContext
 
dumpImageCapabilities(ImageCapabilities, String, String) - Static method in class com.pixelmed.display.DescribeGraphicsEnvironment
 
dumpListOfAllAvailableReaders(PrintStream) - Static method in class com.pixelmed.utils.CapabilitiesAvailable
 
dumpPDVList(LinkedList) - Method in class com.pixelmed.network.ReceivedDataHandler
Dump a list of the Presentation Data Values supplied to standard error
dumpPDVListToString(LinkedList) - Method in class com.pixelmed.network.ReceivedDataHandler
Log a list of the Presentation Data Values supplied at the debug level
dumpRootPaneAndChildren(PrintStream, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpRootPaneAndChildren(PrintStream) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
dumpShape(Shape) - Static method in class com.pixelmed.geometry.LocalizerPosterFactory
 
dumpShapes(Vector) - Static method in class com.pixelmed.geometry.LocalizerPosterFactory
 
DVHData - Static variable in class com.pixelmed.dicom.TagFromName
 

E

earliestDateByOrignalPatientID - Variable in class com.pixelmed.apps.PseudonymizeAndSequester
 
earliestDatesIndexedBySourceFilePath - Variable in class com.pixelmed.display.DicomCleaner
 
EarliestYearActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.EarliestYearActionListener
 
ECGPanel - Class in com.pixelmed.displaywave
Implements a component that can display an array of tiles, each of which is a 2D graph of ECG values.
ECGPanel(short[][], int, int, String[], int, int, float, float[], float, float, float, int[], int, int) - Constructor for class com.pixelmed.displaywave.ECGPanel
Construct a component containing an array of tiles of ECG waveforms.
ECGViewer - Class in com.pixelmed.displaywave
This class is an entire application for displaying and viewing DICOM and SCP ECG waveforms.
EchoNumbers - Static variable in class com.pixelmed.dicom.TagFromName
 
EchoTime - Static variable in class com.pixelmed.dicom.TagFromName
 
EchoTrainLength - Static variable in class com.pixelmed.dicom.TagFromName
 
EditRemoteAEActionListener() - Constructor for class com.pixelmed.network.NetworkApplicationConfigurationDialog.EditRemoteAEActionListener
 
EditRemoteHostActionListener() - Constructor for class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog.EditRemoteHostActionListener
 
EMERG - Static variable in class com.pixelmed.utils.Syslog
 
EncapsulateCompressedPixelData - Class in com.pixelmed.convert
A class to create a DICOM image format file encoded in a compressed transfer syntax with the compressed bitstreams supplied from files.
EncapsulateCompressedPixelData() - Constructor for class com.pixelmed.convert.EncapsulateCompressedPixelData
 
EncapsulateData - Class in com.pixelmed.convert
A class to create a DICOM encapsulated data object from a data file and supplied metadata and/or composite context.
EncapsulateData(String, String, String, String) - Constructor for class com.pixelmed.convert.EncapsulateData
Create a DICOM encapsulated data object from a data file and supplied metadata
EncapsulatedCDAStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
encapsulatedDocument - Static variable in class com.pixelmed.dicom.DicomDirectoryRecordType
 
EncapsulatedDocument - Static variable in class com.pixelmed.dicom.TagFromName
 
EncapsulatedInputStream - Class in com.pixelmed.dicom
A class that extends InputStream by adding a mechanism for unecapsulating an undefined length DICOM attribute, such as is used for compressed Pixel Data.
EncapsulatedInputStream(BinaryInputStream, boolean, boolean) - Constructor for class com.pixelmed.dicom.EncapsulatedInputStream
Construct a byte ordered stream from the supplied stream.
EncapsulatedInputStream(BinaryInputStream) - Constructor for class com.pixelmed.dicom.EncapsulatedInputStream
Construct a byte ordered stream from the supplied stream.
EncapsulatedPDFStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
encapsulatedPixelData - Variable in class com.pixelmed.dicom.TransferSyntax
 
EncapsulatedSTLStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
encode(String) - Method in class com.pixelmed.utils.PhoneticStringEncoder
 
encoder - Variable in class com.pixelmed.utils.PhoneticStringEncoder
 
encoderClass - Variable in class com.pixelmed.utils.PhoneticStringEncoder
 
encounteredTrappedExceptions() - Method in class com.pixelmed.network.StorageSOPClassSCU
 
EncryptedAttributesSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
EncryptedContentTransferSyntaxUID - Static variable in class com.pixelmed.dicom.TagFromName
 
endDateTime - Variable in class com.pixelmed.dose.CTDose
 
endDirection - Variable in class com.pixelmed.dose.ScanRange
 
endLocation - Variable in class com.pixelmed.dose.ScanRange
 
EndMessageID - Static variable in class com.pixelmed.dicom.TagFromName
 
endProgressBar() - Method in class com.pixelmed.display.SafeProgressBarUpdaterThread
 
endProgressBar(SafeProgressBarUpdaterThread) - Static method in class com.pixelmed.display.SafeProgressBarUpdaterThread
 
EnhancedCTImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedMRColorImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedMRImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedPETImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedUSVolumeStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedXAImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
EnhancedXRFImageStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
entireBodyDefaultAnatomy - Static variable in class com.pixelmed.dose.CTDoseAcquisition
 
entries - Variable in class com.pixelmed.convert.TIFFImageFileDirectory
 
entriesIndexedBySOPInstanceUID - Variable in class com.pixelmed.dicom.ImageLibrary
 
epochForDateModification - Static variable in class com.pixelmed.apps.PseudonymizeAndSequester
 
epsilonEquals(double, double, double) - Method in class com.pixelmed.test.TestGeometryOfSlice
 
equals(Object) - Method in class com.pixelmed.anatproc.Concept
Indicates whether some other object is "equal to" this one.
equals(Object) - Method in class com.pixelmed.anatproc.SchemeAndValuePair
 
equals(Object) - Method in class com.pixelmed.database.DatabaseTreeRecord
 
equals(Object) - Method in class com.pixelmed.dicom.AttributeList
 
equals(Object) - Method in class com.pixelmed.dicom.AttributeTag
Compare tags based on their group and element values.
equals(Object) - Method in class com.pixelmed.dicom.AttributeTreeRecord
 
equals(Object) - Method in class com.pixelmed.dicom.CodedSequenceItem
 
equals(Object) - Method in class com.pixelmed.dicom.CompositeInstanceContext
 
equals(Object) - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
equals(Object) - Method in class com.pixelmed.dose.CTAcquisitionParameters
 
equals(Object) - Method in class com.pixelmed.dose.CTDoseAcquisition
 
equals(Object) - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
equals(Object) - Method in class com.pixelmed.dose.ScanRange
 
equals(Object) - Method in class com.pixelmed.event.EventContext
 
equals(Object) - Method in class com.pixelmed.ftp.FTPRemoteHost
 
equals(Object) - Method in class com.pixelmed.ftp.FTPSecurityType
 
equals(Object) - Method in class com.pixelmed.network.ApplicationEntity
 
equals(Object) - Method in class com.pixelmed.network.PresentationAddress
 
equals(Object) - Method in class com.pixelmed.query.QueryTreeRecord
 
equals(Object) - Method in class com.pixelmed.scpecg.SCPTreeRecord
 
equals(Object) - Method in class com.pixelmed.transfermonitor.TransferMonitoringContext
 
equalsApartFromIrradiationEventUID(CTAcquisitionParameters) - Method in class com.pixelmed.dose.CTAcquisitionParameters
 
equipment - Variable in class com.pixelmed.dicom.CompositeInstanceContext.Selector
 
ERR - Static variable in class com.pixelmed.utils.Syslog
 
error(String) - Method in class com.pixelmed.slf4j.Logger
Log a message at the ERROR level.
error(String, Object...) - Method in class com.pixelmed.slf4j.Logger
Log a message at the ERROR level.
error(String, Throwable) - Method in class com.pixelmed.slf4j.Logger
Log an exception (throwable) at the ERROR level with an accompanying message.
ErrorComment - Static variable in class com.pixelmed.dicom.TagFromName
 
errorEnabled - Variable in class com.pixelmed.slf4j.Logger
 
establishInitialWindowOrVOILUT() - Method in class com.pixelmed.display.SingleImagePanel
 
establishStatisticalWindow() - Method in class com.pixelmed.display.SingleImagePanel
 
EstimatedRadiographicMagnificationFactor - Static variable in class com.pixelmed.dicom.TagFromName
 
EthnicGroup - Static variable in class com.pixelmed.dicom.TagFromName
 
evaluateStatusAndSetSuccess(AttributeList) - Method in class com.pixelmed.network.CompositeResponseHandler
Extract the status information from a composite response and set the status flag accordingly.
evaluateStatusAndSetSuccess(AttributeList) - Method in class com.pixelmed.network.MoveSOPClassSCU.CMoveResponseHandler
 
evaluateStatusAndSetSuccess(AttributeList) - Method in class com.pixelmed.network.StorageSOPClassSCU.CStoreResponseHandler
 
evaluateStatusAndSetSuccess(AttributeList) - Method in class com.pixelmed.network.VerificationSOPClassSCU.CEchoResponseHandler
 
Event - Class in com.pixelmed.event
 
Event() - Constructor for class com.pixelmed.event.Event
 
Event(Object) - Constructor for class com.pixelmed.event.Event
 
Event(Object, EventContext) - Constructor for class com.pixelmed.event.Event
 
Event(EventContext) - Constructor for class com.pixelmed.event.Event
 
EventContext - Class in com.pixelmed.event
 
EventContext(String) - Constructor for class com.pixelmed.event.EventContext
 
EventDispatcher - Interface in com.pixelmed.event
 
exact - Variable in class com.pixelmed.apps.FindAndCopySelectedDicomFiles
 
exactCalculation - Static variable in class com.pixelmed.display.event.WindowLinearCalculationChangeEvent
 
excludeList - Variable in class com.pixelmed.database.MapTableModel
 
excludeList - Variable in class com.pixelmed.dicom.AttributeListTableModel
 
ExecuteTranslet - Class in com.pixelmed.validate
Use a translet from an XSL-T source file to transform one XML file to another.
ExecuteTranslet() - Constructor for class com.pixelmed.validate.ExecuteTranslet
 
EXIFIFD - Static variable in class com.pixelmed.convert.TIFFTags
 
existingTestFileToBeCleaned - Static variable in class com.pixelmed.test.TestCleanerReceiveAndClean
 
exp_date - Variable in class com.pixelmed.convert.AnalyzeHeader
 
exp_time - Variable in class com.pixelmed.convert.AnalyzeHeader
 
expandArray(short[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(short[], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
expandArray(short[][]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(short[][], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
expandArray(int[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(int[], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
expandArray(long[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(long[], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
expandArray(float[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(float[], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
expandArray(double[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(double[], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
expandArray(String[]) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding one element to the end.
expandArray(String[], int) - Static method in class com.pixelmed.dicom.ArrayCopyUtilities
Expand an array by adding elements to the end.
ExpectedResult(AttributeTag, boolean, boolean, String, String) - Constructor for class com.pixelmed.test.TestCleanerReceiveAndClean.ExpectedResult
 
explanation - Variable in class com.pixelmed.apps.InsertRealWorldValueMap
 
explicitVR - Variable in class com.pixelmed.dicom.TransferSyntax
 
ExplicitVRBigEndian - Static variable in class com.pixelmed.dicom.TransferSyntax
 
ExplicitVRLittleEndian - Static variable in class com.pixelmed.dicom.TransferSyntax
 
ExportActionListener() - Constructor for class com.pixelmed.apps.DownloadOrTransmit.ExportActionListener
 
ExportActionListener() - Constructor for class com.pixelmed.display.DicomCleaner.ExportActionListener
 
exportButtonLabel - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
exportButtonToolTipText - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
exportDirectoryPath - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
exportDirectoryPath - Variable in class com.pixelmed.display.DicomCleaner
 
exportedZipFileName - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
exportedZipFileName - Static variable in class com.pixelmed.display.DicomCleaner
 
exportFiles(Vector<String>, File, String, SafeProgressBarUpdaterThread, MessageLogger, boolean, boolean, boolean, String) - Static method in class com.pixelmed.apps.DownloadOrTransmit
 
exposedRangeInMM - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
EXPOSURE - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
ExposureDoseSequence - Class in com.pixelmed.doseocr
A class to extract Exposure Dose Sequence and related attributes from Philips modality dose report screen saves.
ExposureDoseSequence() - Constructor for class com.pixelmed.doseocr.ExposureDoseSequence
 
EXPOSURETIME - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
exposureTimeInSeconds - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
exposureTimePerRotation - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
extendCreateStatementStringWithAnyExtraAttributes(StringBuffer, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL CREATE TABLE statement in the process of being constructed with any additional attributes (columns) that the model requires.
extendCreateStatementStringWithAnyExtraAttributes(StringBuffer, InformationEntity) - Method in class com.pixelmed.database.PatientStudySeriesConcatenationInstanceModel
 
extendCreateStatementStringWithDerivedAttributes(StringBuffer, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL CREATE TABLE statement in the process of being constructed with any derived attributes (columns) that the model requires.
extendCreateStatementStringWithDerivedAttributes(StringBuffer, InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL CREATE TABLE statement in the process of being constructed with any derived attributes (columns) that the model requires.
extendCreateStatementStringWithUserColumns(StringBuffer, InformationEntity) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry.OurPatientStudySeriesInstanceModel
 
extendCreateStatementStringWithUserColumns(StringBuffer, InformationEntity) - Method in class com.pixelmed.apps.StudyReceiver.OurPatientStudySeriesInstanceModel
 
extendCreateStatementStringWithUserColumns(StringBuffer, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL CREATE TABLE statement in the process of being constructed with any user optional columns that the model requires.
extendInsertStatementStringWithAttributeNamesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the names of the attributes in the instance for the entity.
extendInsertStatementStringWithAttributeNamesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the names of the attributes in the instance for the entity.
extendInsertStatementStringWithAttributeValuesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity, String, String) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the values of the attributes in the instance for the entity.
extendInsertStatementStringWithAttributeValuesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity, String, String) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the values of the attributes in the instance for the entity.
extendInsertStatementStringWithDerivedAttributeNamesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the names of the derived attributes in the instance for the entity.
extendInsertStatementStringWithDerivedAttributeNamesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the names of the derived attributes in the instance for the entity.
extendInsertStatementStringWithDerivedAttributeValuesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the values of the derived attributes in the instance for the entity.
extendInsertStatementStringWithDerivedAttributeValuesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the values of the derived attributes in the instance for the entity.
extendInsertStatementStringWithPersonNameSearchColumnsForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the names of the additional search columns derived from person name attributes in the instance for the entity.
extendInsertStatementStringWithPersonNameSearchColumnsForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the names of the additional search columns derived from person name attributes in the instance for the entity.
extendInsertStatementStringWithPersonNameSearchValuesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the values of the additional search columns derived from person name attributes in the instance for the entity.
extendInsertStatementStringWithPersonNameSearchValuesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DicomDatabaseInformationModel
Extend a SQL INSERT statement in the process of being constructed with the values of the additional search columns derived from person name attributes in the instance for the entity.
extendStatementStringWithMatchingAttributesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
Extend a SQL SELECT statement in the process of being constructed with matching clauses for the unique keys of the entity and all its parents.
extendStatementStringWithMatchingAttributesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.MinimalPatientStudySeriesInstanceModel
 
extendStatementStringWithMatchingAttributesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.PatientStudySeriesConcatenationInstanceModel
 
extendStatementStringWithMatchingAttributesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.StudySeriesInstanceModel
 
extendStatementStringWithMatchingAttributesForSelectedInformationEntity(StringBuffer, AttributeList, InformationEntity) - Method in class com.pixelmed.database.StudySeriesInstanceSelectiveMatchModel
 
ExtensibleSRStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
externalServerInstance - Variable in class com.pixelmed.database.DatabaseInformationModel
 
extractBytes(byte[], int, int) - Static method in class com.pixelmed.utils.ByteArray
Extract a portion of a byte array into a new byte array.
extractRadiationDoseSRFiles(Vector) - Method in class com.pixelmed.apps.DoseUtility
 
extractValues(int, byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues
 
extractValues(byte[], int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFAsciiValues
 
extractValues(byte[], int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFByteValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFIfd8Values
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFIfdValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFLong8Values
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFLongValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFRationalValues
 
extractValues(byte[], int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFSByteValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFShortValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFSlong8Values
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFSLongValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFSRationalValues
 
extractValues(byte[], ByteOrder, int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFSShortValues
 
extractValues(byte[], int) - Static method in class com.pixelmed.convert.TIFFValues.TIFFUndefinedValues
 
EXTRASAMPLES - Static variable in class com.pixelmed.convert.TIFFTags
 

F

f - Variable in class com.pixelmed.convert.TIFFImageFileDirectories
 
failedSet - Variable in class com.pixelmed.apps.DeidentifyAndRedact
 
FAXDCS - Static variable in class com.pixelmed.convert.TIFFTags
 
FAXPROFILE - Static variable in class com.pixelmed.convert.TIFFTags
 
FAXRECVPARAMS - Static variable in class com.pixelmed.convert.TIFFTags
 
FAXRECVTIME - Static variable in class com.pixelmed.convert.TIFFTags
 
FAXSUBADDRESS - Static variable in class com.pixelmed.convert.TIFFTags
 
FD - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
FEDEX_EDR - Static variable in class com.pixelmed.convert.TIFFTags
 
fiducial - Static variable in class com.pixelmed.dicom.DicomDirectoryRecordType
 
FiducialUID - Static variable in class com.pixelmed.dicom.TagFromName
 
field_skip - Variable in class com.pixelmed.convert.AnalyzeHeader
 
FieldOfViewDimensionsInFloat - Static variable in class com.pixelmed.dicom.TagFromName
 
FieldOfViewHorizontalFlip - Static variable in class com.pixelmed.dicom.TagFromName
 
FieldOfViewOrigin - Static variable in class com.pixelmed.dicom.TagFromName
 
FieldOfViewRotation - Static variable in class com.pixelmed.dicom.TagFromName
 
FieldOfViewShape - Static variable in class com.pixelmed.dicom.TagFromName
 
fields - Variable in class com.pixelmed.convert.NRRDHeader
 
file - Variable in class com.pixelmed.dicom.OtherAttributeOnDisk
 
FILE_COPIED - Static variable in class com.pixelmed.database.DatabaseInformationModel
 
FILE_REFERENCED - Static variable in class com.pixelmed.database.DatabaseInformationModel
 
FileMetaInformation - Class in com.pixelmed.dicom
A class to abstract the contents of a file meta information header as used for a DICOM PS 3.10 file, with additional static methods to add to and extract from an existing list of attributes.
FileMetaInformation(String, String, String, String) - Constructor for class com.pixelmed.dicom.FileMetaInformation
Construct an instance of the file meta information from the specified parameters.
FileMetaInformationGroupLength - Static variable in class com.pixelmed.dicom.TagFromName
 
FileMetaInformationVersion - Static variable in class com.pixelmed.dicom.TagFromName
 
filename - Variable in class com.pixelmed.convert.TIFFFile
 
fileNameExtension - Variable in class com.pixelmed.dicom.TransferSyntax
 
FilenameFilterByCaseInsensitiveSuffix - Class in com.pixelmed.utils
 
FilenameFilterByCaseInsensitiveSuffix(String) - Constructor for class com.pixelmed.utils.FilenameFilterByCaseInsensitiveSuffix
 
filePrefixForDicomInstanceFilesOnInterchangeMedia - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
filePrefixForDicomInstanceFilesOnInterchangeMedia - Static variable in class com.pixelmed.display.DicomCleaner
 
FileReaper - Class in com.pixelmed.utils
 
FileReaper() - Constructor for class com.pixelmed.utils.FileReaper
 
files - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleCompressedFilesOnDisk
 
files - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleCompressedFrames
 
files - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleFilesOnDisk
 
files - Variable in class com.pixelmed.dicom.OtherWordAttributeMultipleFilesOnDisk
 
filesAlreadyDone - Variable in class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
FileSetConsistencyFlag - Static variable in class com.pixelmed.dicom.TagFromName
 
FileSetID - Static variable in class com.pixelmed.dicom.TagFromName
 
fileSuffixForDicomInstanceFilesOnInterchangeMedia - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
fileSuffixForDicomInstanceFilesOnInterchangeMedia - Static variable in class com.pixelmed.display.DicomCleaner
 
FileUtilities - Class in com.pixelmed.utils
Various static methods helpful for handling files.
FillerOrderNumberImagingServiceRequest - Static variable in class com.pixelmed.dicom.TagFromName
 
FILLORDER - Static variable in class com.pixelmed.convert.TIFFTags
 
filter - Variable in class com.pixelmed.query.QueryTreeRecord
 
FilterPanel - Class in com.pixelmed.query
The FilterPanel class provides a graphical user interface for editing the string values of DICOM attributes in list.
FilterPanel(AttributeList) - Constructor for class com.pixelmed.query.FilterPanel
Display a list of DICOM attributes and their editable string values.
finalize() - Method in class com.pixelmed.database.DatabaseInformationModel
 
finalize() - Method in class com.pixelmed.dicom.OtherAttributeOnDisk
 
finalize() - Method in class com.pixelmed.dicom.OtherByteAttributeMultipleFilesOnDisk
 
finalize() - Method in class com.pixelmed.dicom.OtherWordAttributeMultipleFilesOnDisk
 
finalize() - Method in class com.pixelmed.display.DicomImageBlackout
 
finalize() - Method in class com.pixelmed.display.SingleImagePanel
 
finalize() - Method in class com.pixelmed.display.SourceImage
 
finalize() - Method in class com.pixelmed.display.SpectraPanel
 
finalize() - Method in class com.pixelmed.utils.FileReaper
 
find(SchemeAndValuePair) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
find(CodedSequenceItem) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
find(String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
find(Concept) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findAllAttributeValuesForAllRecordsForThisInformationEntity(InformationEntity) - Method in class com.pixelmed.database.DatabaseInformationModel
For all records of an information entity, get the values of all the columns in the entity's database table.
findAllAttributeValuesForAllRecordsForThisInformationEntityWithMatchingParent(InformationEntity, InformationEntity, String, String) - Method in class com.pixelmed.database.DatabaseInformationModel
For all records of an information entity with all parents matching a particular attribute value, get the values of all attributes.
findAllAttributeValuesForAllRecordsForThisInformationEntityWithSpecifiedKeyValue(InformationEntity, String, String) - Method in class com.pixelmed.database.DatabaseInformationModel
For all records of an information entity matching the specified key value, get the values of all the columns in the entity's database table.
findAllAttributeValuesForAllRecordsForThisInformationEntityWithSpecifiedParent(InformationEntity, String) - Method in class com.pixelmed.database.DatabaseInformationModel
For all records of an information entity with the specified parent, get the values of all the columns in the entity's database table.
findAllAttributeValuesForAllRecordsForThisInformationEntityWithSpecifiedUID(InformationEntity, String) - Method in class com.pixelmed.database.DatabaseInformationModel
For all records of an information entity matching the specified UID, get the values of all the columns in the entity's database table.
findAllAttributeValuesForSelectedRecord(InformationEntity, String) - Method in class com.pixelmed.database.DatabaseInformationModel
For a particular instance of an information entity, get the values of all the columns in the entity's database table.
findAllContainedReferencedFileNames(DicomDirectoryRecord, String) - Static method in class com.pixelmed.dicom.DicomDirectory
Get all the referenced file names at or below the specified directory record.
findAllContainedReferencedFileNames(String) - Method in class com.pixelmed.dicom.DicomDirectory
Get all the referenced file names in the entire directory.
findAllContainedReferencedFileNamesAndTheirRecords(DicomDirectoryRecord, String) - Static method in class com.pixelmed.dicom.DicomDirectory
Get all the referenced file names at or below the specified directory record, and a map to the directory records that reference them.
findAllContainedReferencedFileNamesAndTheirRecords(String) - Method in class com.pixelmed.dicom.DicomDirectory
Get all the referenced file names in the entire directory, and a map to the directory records that reference them.
findAllContainedSOPInstances(ContentItem, ContentItem) - Static method in class com.pixelmed.dicom.StructuredReport
Find all coordinate and image references within content items of the sub-tree rooted at the specified node (which may be the root).
findAllImagesForFrameOfReference(String) - Method in class com.pixelmed.dicom.DicomDirectory
Get the attribute lists from all the IMAGE level directory records which have a particular FrameOfReferenceUID.
findAllNestedReferencedSOPInstanceUIDs(AttributeList, Set<String>) - Static method in class com.pixelmed.dicom.AttributeList
Find all referenced SOP Instance UIDs that are nested within Sequences in the specified list and add them to the supplied set.
findAllNestedReferencedSOPInstanceUIDs(AttributeList) - Static method in class com.pixelmed.dicom.AttributeList
Find all referenced SOP Instance UIDs that are nested within Sequences in the specified list.
findAllNestedReferencedSOPInstanceUIDs(Set<String>) - Method in class com.pixelmed.dicom.AttributeList
Find all referenced SOP Instance UIDs that are nested within Sequences in this list and add them to the supplied set.
findAllNestedReferencedSOPInstanceUIDs() - Method in class com.pixelmed.dicom.AttributeList
Find all referenced SOP Instance UIDs that are nested within Sequences in this list.
findAmongstGeneralAttributes(AttributeList, DictionaryOfConcepts, String[]) - Static method in class com.pixelmed.anatproc.CTAnatomy
 
findAmongstGeneralAttributes(AttributeList, DictionaryOfConcepts, String[]) - Static method in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
findAnatomicConcept(AttributeList) - Static method in class com.pixelmed.anatproc.CTAnatomy
 
findAnatomicConcept(AttributeList) - Static method in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
FindAndCopySelectedDicomFiles - Class in com.pixelmed.apps
This class copies a set of DICOM files, if they match specified criteria.
FindAndCopySelectedDicomFiles(MessageLogger) - Constructor for class com.pixelmed.apps.FindAndCopySelectedDicomFiles
 
FindAndCopySelectedDicomFilesUsingDatabase - Class in com.pixelmed.apps
This class copies a set of DICOM files, if they match specified criteria.
FindAndCopySelectedDicomFilesUsingDatabase(DatabaseInformationModel, Set<String>, String) - Constructor for class com.pixelmed.apps.FindAndCopySelectedDicomFilesUsingDatabase
 
findByConceptIdentifier(String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findByConceptUniqueIdentifier(String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findCandidateFilesToSendToRegistry(InformationEntity, String, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile>, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile>, Set<DoseReporterWithLegacyOCRAndAutoSendToRegistry.CandidateFile>, long) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
findClosestSliceInSamePlane(GeometryOfSlice) - Method in class com.pixelmed.geometry.GeometryOfVolume
Find the slice in the our geometry that is closest to the supplied slice geometry.
findCodeInEntriesFirstThenTryCodeMeaningInEntriesThenTryLongestIndividualEntryContainedWithinCodeMeaning(CodedSequenceItem) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findCodeStringExact(String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findComponentsOfClass(ArrayList<Component>, Component, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
findComponentsOfClass(Component, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
findComponentsOfClass(String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
findComponentsOfClassWithTextValue(ArrayList<Component>, Component, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
findComponentsOfClassWithTextValue(Component, String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
findComponentsOfClassWithTextValue(String, String) - Static method in class com.pixelmed.test.UserInterfaceUtilities
 
findCTSeriesAndRelatedRecordsInQueryTree(QueryTreeRecord, ArrayList<QueryTreeRecord>) - Static method in class com.pixelmed.apps.DoseUtility
 
findDoseSeriesRecordsInQueryTree(QueryTreeRecord, ArrayList<QueryTreeRecord>) - Static method in class com.pixelmed.apps.DoseUtility
 
findEarliestDate(Map<String, Date>, Vector<String>) - Static method in class com.pixelmed.display.DicomCleaner
 
findEarliestDateTime(AttributeList, Date, String) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Get the earliest patient event related date and time.
findEarliestDateTime(AttributeList) - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Get the earliest patient event related date and time.
findFilesToSend(InformationEntity, String, List<String>) - Method in class com.pixelmed.apps.MultiModalitySimulator
 
findHierarchicalReferencesToSOPInstances(AttributeList) - Static method in class com.pixelmed.dicom.HierarchicalSOPInstanceReference
Find hierarchical references to instances that may be referenced anywhere in any dataset regardless of depth of nesting.
findHierarchicalReferencesToSOPInstancesInStructuredReport(AttributeList) - Static method in class com.pixelmed.dicom.HierarchicalSOPInstanceReference
Find hierarchical references to instances that may be referenced in the content tree of an SR object.
findImageLibraryContainer(ContentItem) - Static method in class com.pixelmed.dicom.ImageLibrary
Find the Image Library contained within an SR content tree.
findInEntriesFirstThenTryLongestIndividualEntryContainedWithin(String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findLaterality(AttributeList, DisplayableAnatomicConcept) - Static method in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
findLead(String[], String) - Static method in class com.pixelmed.displaywave.SourceECG
Find the named lead in an array of lead names.
findLongestIndividualEntryContainedWithin(String) - Method in class com.pixelmed.anatproc.DictionaryOfConcepts
 
findMaxComponents() - Method in class com.pixelmed.geometry.GeometryOfSlice
 
findMaxComponents(double[], double[], double[]) - Method in class com.pixelmed.geometry.GeometryOfVolume
 
findSelectedAttributeValuesForSelectedRecord(InformationEntity, String, String) - Method in class com.pixelmed.database.DatabaseInformationModel
For a particular instance of an information entity, get the value of the selected column in the entity's database table.
FindSOPClassSCU - Class in com.pixelmed.network
This class implements the SCU role of C-FIND SOP Classes.
FindSOPClassSCU(Association, String, AttributeList, IdentifierHandler) - Constructor for class com.pixelmed.network.FindSOPClassSCU
 
FindSOPClassSCU(String, int, String, String, String, AttributeList, IdentifierHandler) - Constructor for class com.pixelmed.network.FindSOPClassSCU
 
findSuitableSRFilesAndSendThemToRegistry(String) - Method in class com.pixelmed.apps.DoseReporterWithLegacyOCRAndAutoSendToRegistry
 
findView(AttributeList) - Static method in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
finish() - Method in class com.pixelmed.apps.PseudonymizeAndSequester.OurMediaImporter
 
firstCharacterPossibilities - Variable in class com.pixelmed.network.ProbeCapability.StringPermutationGenerator
 
firstValueMapped - Variable in class com.pixelmed.apps.InsertRealWorldValueMap
 
fitToWindow - Variable in class com.pixelmed.display.DisplayedAreaSelection
 
FIXED_HEADER_LENGTH - Static variable in class com.pixelmed.convert.AnalyzeHeader
 
FIXED_HEADER_LENGTH - Static variable in class com.pixelmed.convert.NIfTI1Header
 
FL - Static variable in class com.pixelmed.dicom.ValueRepresentation
 
flipHorizontally(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
flipVertically(BufferedImage) - Static method in class com.pixelmed.display.BufferedImageUtilities
 
FLOAT - Static variable in class com.pixelmed.convert.TIFFTypes
 
FloatArrayStatistics(float, float) - Constructor for class com.pixelmed.display.PlotGraph.FloatArrayStatistics
 
FloatArrayStatistics(float[]) - Constructor for class com.pixelmed.display.PlotGraph.FloatArrayStatistics
 
FloatDoubleAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Float Double (FD) attributes.
FloatDoubleAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.FloatDoubleAttribute
Construct an (empty) attribute.
FloatDoubleAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.FloatDoubleAttribute
Read an attribute from an input stream.
FloatDoubleAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.FloatDoubleAttribute
Read an attribute from an input stream.
FloatFormatter - Class in com.pixelmed.utils
Various static methods helpful for formatting floating point values.
floatingPointValue - Variable in class com.pixelmed.dicom.ContentItemFactory.NumericContentItem
 
FloatingPointValue - Static variable in class com.pixelmed.dicom.TagFromName
 
FloatPixelData - Static variable in class com.pixelmed.dicom.TagFromName
 
FloatSingleAttribute - Class in com.pixelmed.dicom
A concrete class specializing Attribute for Float Single (FL) attributes.
FloatSingleAttribute(AttributeTag) - Constructor for class com.pixelmed.dicom.FloatSingleAttribute
Construct an (empty) attribute.
FloatSingleAttribute(AttributeTag, long, DicomInputStream) - Constructor for class com.pixelmed.dicom.FloatSingleAttribute
Read an attribute from an input stream.
FloatSingleAttribute(AttributeTag, Long, DicomInputStream) - Constructor for class com.pixelmed.dicom.FloatSingleAttribute
Read an attribute from an input stream.
flush() - Method in class com.pixelmed.dicom.AsynchronousOutputStream
Flushes this output stream and forces any buffered output bytes to be written out to the stream.
flush() - Method in class com.pixelmed.dicom.NullOutputStream
 
flush() - Method in class com.pixelmed.network.AssociationOutputStream
Do nothing.
flush() - Method in class com.pixelmed.transfermonitor.MonitoredOutputStream
 
flush() - Method in class com.pixelmed.utils.ScrollingTextAreaWriter
 
flushCachedCopies() - Method in class com.pixelmed.dicom.StringAttribute
 
flushMapOfUIDs() - Static method in class com.pixelmed.dicom.ClinicalTrialsAttributes
Flush (remove all entries in) the map of original UIDs to replacement UIDs.
FolderNamingStrategy() - Constructor for class com.pixelmed.dicom.MoveDicomFilesIntoHierarchy.FolderNamingStrategy
 
forceFitEntireMatrixToWindow - Variable in class com.pixelmed.display.MammoImageViewer
 
FRAME - Static variable in class com.pixelmed.dicom.InformationEntity
 
frame - Variable in class com.pixelmed.display.ChestImageViewer
 
frame - Variable in class com.pixelmed.display.MammoImageViewer
 
FrameAcquisitionDateTime - Static variable in class com.pixelmed.dicom.TagFromName
 
FrameAcquisitionDuration - Static variable in class com.pixelmed.dicom.TagFromName
 
FrameAcquisitionNumber - Static variable in class com.pixelmed.dicom.TagFromName
 
FrameAnatomySequence - Static variable in class com.pixelmed.dicom.TagFromName
 
FrameComments - Static variable in class com.pixelmed.dicom.TagFromName
 
framecontent - Variable in class com.pixelmed.dicom.FunctionalGroupUtilities.Selector
 
FrameContentSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
FRAMECOUNT - Static variable in class com.pixelmed.convert.TIFFTags
 
frameHeight - Variable in class com.pixelmed.display.ChestImageViewer
 
frameHeight - Variable in class com.pixelmed.display.MammoImageViewer
 
FrameIncrementPointer - Static variable in class com.pixelmed.dicom.TagFromName
 
frameItemByteOffsets - Variable in class com.pixelmed.dicom.OtherByteAttributeCompressedSeparateFramesOnDisk
 
frameItemLengths - Variable in class com.pixelmed.dicom.OtherByteAttributeCompressedSeparateFramesOnDisk
 
FrameLaterality - Static variable in class com.pixelmed.dicom.TagFromName
 
FRAMENUMBER - Static variable in class com.pixelmed.display.DemographicAndTechniqueAnnotations
 
frameOfReference - Variable in class com.pixelmed.dicom.CompositeInstanceContext.Selector
 
frameOfReferenceModuleAttributeTags - Static variable in class com.pixelmed.dicom.CompositeInstanceContext
 
frameOfReferenceUID - Variable in class com.pixelmed.dicom.CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
 
FrameOfReferenceUID - Static variable in class com.pixelmed.dicom.TagFromName
 
frameOfReferenceUID - Variable in class com.pixelmed.dose.CTAcquisitionParameters
 
FrameReferenceDateTime - Static variable in class com.pixelmed.dicom.TagFromName
 
FrameReferenceTime - Static variable in class com.pixelmed.dicom.TagFromName
 
frames - Variable in class com.pixelmed.convert.RawImageDescription
 
frames - Variable in class com.pixelmed.dicom.OtherByteAttributeMultipleCompressedFrames
 
frames - Variable in class com.pixelmed.geometry.GeometryOfVolume
 
framesAreSeparated() - Method in class com.pixelmed.dicom.EncapsulatedInputStream
Are frames separated (seperable)?
FrameSelectionChangeEvent - Class in com.pixelmed.display.event
 
FrameSelectionChangeEvent(EventContext, int) - Constructor for class com.pixelmed.display.event.FrameSelectionChangeEvent
 
FrameSet - Class in com.pixelmed.dicom
A class to describe a set of frames sharing common characteristics suitable for display or analysis as an entity.
framesForSegmentBySegmentNumber - Variable in class com.pixelmed.display.SuperimposedDicomSegments
 
FrameSortOrderChangeEvent - Class in com.pixelmed.display.event
 
FrameSortOrderChangeEvent(EventContext, int[], int) - Constructor for class com.pixelmed.display.event.FrameSortOrderChangeEvent
 
FrameType - Static variable in class com.pixelmed.dicom.TagFromName
 
FrameVOILUTSequence - Static variable in class com.pixelmed.dicom.TagFromName
 
frameWidth - Variable in class com.pixelmed.display.ChestImageViewer
 
frameWidth - Variable in class com.pixelmed.display.MammoImageViewer
 
FREE - Static variable in class com.pixelmed.dose.CTScanType
 
FREEBYTECOUNTS - Static variable in class com.pixelmed.convert.TIFFTags
 
FREEOFFSETS - Static variable in class com.pixelmed.convert.TIFFTags
 
fromString(String) - Static method in class com.pixelmed.dicom.InformationEntity
Get the information entity corresponding to the string name
fromString(String, int, char) - Static method in class com.pixelmed.utils.FloatFormatter
Extract a specified number of delimited numeric values from a string into an array of doubles.
fromString(String, char) - Static method in class com.pixelmed.utils.FloatFormatter
Extract an arbitrary number of delimited numeric values from a string into an array of doubles.
ftpApplicationProperties - Variable in class com.pixelmed.apps.DoseUtility
 
ftpApplicationProperties - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
FTPApplicationProperties - Class in com.pixelmed.ftp
This class provides common support to applications requiring properties related to FTP network services.
FTPApplicationProperties() - Constructor for class com.pixelmed.ftp.FTPApplicationProperties
Create default properties.
FTPApplicationProperties(Properties) - Constructor for class com.pixelmed.ftp.FTPApplicationProperties
Extract the ftp properties from the supplied properties.
ftpApplicationProperties - Variable in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog
 
ftpButtonLabel - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
ftpButtonToolTipText - Static variable in class com.pixelmed.apps.DownloadOrTransmit
 
FTPClientApplicationConfigurationDialog - Class in com.pixelmed.ftp
This class provides a user interface for applications to configure and test properties related to remote FTP hosts.
FTPClientApplicationConfigurationDialog(Component, FTPRemoteHostInformation, FTPApplicationProperties) - Constructor for class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog
Configure and test network information.
FTPClientApplicationConfigurationDialog.AddRemoteHostActionListener - Class in com.pixelmed.ftp
 
FTPClientApplicationConfigurationDialog.DoneActionListener - Class in com.pixelmed.ftp
 
FTPClientApplicationConfigurationDialog.EditRemoteHostActionListener - Class in com.pixelmed.ftp
 
FTPClientApplicationConfigurationDialog.RemoveRemoteHostActionListener - Class in com.pixelmed.ftp
 
FTPException - Exception in com.pixelmed.ftp
 
FTPException(String) - Constructor for exception com.pixelmed.ftp.FTPException
 
FTPException(FTPException) - Constructor for exception com.pixelmed.ftp.FTPException
 
FTPFileSender - Class in com.pixelmed.ftp
A class to send files via FTP or secure FTP over TLS.
FTPFileSender(FTPRemoteHost, String[], boolean, MessageLogger, JProgressBar) - Constructor for class com.pixelmed.ftp.FTPFileSender
Construct an ftp connection to send a list of files to a remote server.
FTPFileSender(String, String, String, String, String[], boolean, boolean) - Constructor for class com.pixelmed.ftp.FTPFileSender
Construct an ftp connection to send a list of files to a remote server.
FTPFileSender(String, String, String, String, String[], boolean, boolean, MessageLogger, JProgressBar) - Constructor for class com.pixelmed.ftp.FTPFileSender
Construct an ftp connection to send a list of files to a remote server.
FTPRemoteHost - Class in com.pixelmed.ftp
This class provides a description of the parameters of a remote FTP host.
FTPRemoteHost() - Constructor for class com.pixelmed.ftp.FTPRemoteHost
 
FTPRemoteHost(FTPRemoteHost) - Constructor for class com.pixelmed.ftp.FTPRemoteHost
 
FTPRemoteHost(String, String, String, String, FTPSecurityType) - Constructor for class com.pixelmed.ftp.FTPRemoteHost
 
FTPRemoteHost(String, String, String, String, String) - Constructor for class com.pixelmed.ftp.FTPRemoteHost
 
FTPRemoteHostConfigurationDialog - Class in com.pixelmed.ftp
This class implements a dialog for users to enter ftp remote host configuration parameters.
FTPRemoteHostConfigurationDialog(Component, String, FTPRemoteHost) - Constructor for class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
Configure ftp remote host information.
FTPRemoteHostConfigurationDialog(String, FTPRemoteHost) - Constructor for class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
Configure ftp remote host information.
FTPRemoteHostConfigurationDialog(Component, String) - Constructor for class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
Create new ftp remote host information.
FTPRemoteHostConfigurationDialog(Component) - Constructor for class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
Create new ftp remote host information.
FTPRemoteHostConfigurationDialog() - Constructor for class com.pixelmed.ftp.FTPRemoteHostConfigurationDialog
Create new ftp remote host information.
ftpRemoteHostInformation - Variable in class com.pixelmed.apps.DoseUtility
 
ftpRemoteHostInformation - Variable in class com.pixelmed.apps.DownloadOrTransmit
 
ftpRemoteHostInformation - Variable in class com.pixelmed.ftp.FTPApplicationProperties
 
ftpRemoteHostInformation - Variable in class com.pixelmed.ftp.FTPClientApplicationConfigurationDialog
 
FTPRemoteHostInformation - Class in com.pixelmed.ftp
This class encapsulates information about remote FTP servers.
FTPRemoteHostInformation() - Constructor for class com.pixelmed.ftp.FTPRemoteHostInformation
Construct an empty container for properties of FTP network devices.
FTPRemoteHostInformation(Properties) - Constructor for class com.pixelmed.ftp.FTPRemoteHostInformation
Extract the FTP network properties from the supplied properties.
FTPSecurityType - Class in com.pixelmed.ftp
This class provides a description of the parameters of a remote FTP host.
FtpSendActionListener() - Constructor for class com.pixelmed.apps.DownloadOrTransmit.FtpSendActionListener
 
fullNameByTag - Variable in class com.pixelmed.dicom.DicomDictionaryBase
 
fullyQualifiedMenuEntry - Variable in class com.pixelmed.anatproc.DisplayableConcept
 
FunctionalGroupPointer - Static variable in class com.pixelmed.dicom.TagFromName
 
functionalGroupsReplacementsList - Variable in class com.pixelmed.apps.SetCharacteristicsFromSummary
 
FunctionalGroupUtilities - Class in com.pixelmed.dicom
A class contain useful methods for manipulating Functional Group Sequences.
FunctionalGroupUtilities() - Constructor for class com.pixelmed.dicom.FunctionalGroupUtilities
 
FunctionalGroupUtilities.Selector - Class in com.pixelmed.dicom
A class to select which functional groups are copied or propagated or removed or not during operations on functional groups.
funused1 - Variable in class com.pixelmed.convert.AnalyzeHeader
 
funused2 - Variable in class com.pixelmed.convert.AnalyzeHeader
 
funused3 - Variable in class com.pixelmed.convert.AnalyzeHeader
 

G

GantryID - Static variable in class com.pixelmed.dicom.TagFromName
 
GeneralAudioWaveformStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
GeneralECGStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
generalEquipmentModuleAttributeTags - Static variable in class com.pixelmed.dicom.CompositeInstanceContext
 
generalImageModuleAttributeTags - Static variable in class com.pixelmed.dicom.CompositeInstanceContext
 
generalSeriesModuleAttributeTags - Static variable in class com.pixelmed.dicom.CompositeInstanceContext
 
generalStudyModuleAttributeTags - Static variable in class com.pixelmed.dicom.CompositeInstanceContext
 
generateCommonAttributes(AttributeList, String, String, String, String, String, String, String, boolean) - Static method in class com.pixelmed.convert.CommonConvertedAttributeGeneration
Generate common attributes for converted images.
generated - Variable in class com.pixelmed.convert.AnalyzeHeader
 
generateDICOMPixelDataModuleAttributesFromAnalyzeFile(File, AnalyzeHeader, AttributeList) - Static method in class com.pixelmed.convert.AnalyzeToDicom
Using an Analyze image input file and header, create DICOM Pixel Data Module attributes.
generateDICOMPixelDataModuleAttributesFromNIfTI1File(File, NIfTI1Header, AttributeList) - Static method in class com.pixelmed.convert.NIfTI1ToDicom
Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.
generateDICOMPixelDataModuleAttributesFromNRRDFile(File, NRRDHeader, AttributeList) - Static method in class com.pixelmed.convert.NRRDToDicom
Using an NRRD image input file and header, create DICOM Pixel Data Module attributes.
generateDICOMPixelDataModuleAttributesFromNRRDFile(File, RawImageDescription, AttributeList) - Static method in class com.pixelmed.convert.RawToDicomMultiFrame
Using a raw image input file and header, create DICOM Pixel Data Module attributes.
generateDICOMPixelDataModuleAttributesFromRawRGBFiles(String[], String, RawRGBInformation, AttributeList) - Static method in class com.pixelmed.convert.RawRGBToDicomMultiFrame
Create DICOM Pixel Data Module attributes.
generateDICOMPixelModuleFromConsumerImageFile(String, AttributeList) - Static method in class com.pixelmed.dicom.ImageToDicom
Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.
generateDICOMPixelModuleFromConsumerImageFile(File, AttributeList) - Static method in class com.pixelmed.dicom.ImageToDicom
Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.
generateDICOMPixelModuleFromConsumerImageFile(String) - Static method in class com.pixelmed.dicom.ImageToDicom
Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.
generateDimensions(AttributeList) - Static method in class com.pixelmed.convert.NIfTI1ToDicom
Create a Dimensions Module.
generateDimensions(AttributeList) - Static method in class com.pixelmed.convert.NRRDToDicom
Create a Dimensions Module.
generateDoseReportInformation(DatabaseTreeRecord[], JEditorPane, StringBuffer, boolean, MessageLogger, SafeProgressBarUpdaterThread, int, int) - Method in class com.pixelmed.apps.DoseUtility
 
generateDoseReportInformation(DatabaseTreeRecord, JEditorPane, StringBuffer, boolean, MessageLogger, SafeProgressBarUpdaterThread, int, int) - Method in class com.pixelmed.apps.DoseUtility
 
generateDoseReportInformationFromFiles(Vector) - Static method in class com.pixelmed.doseocr.GenerateRadiationDoseStructuredReport
Extract dose information from a screen or report, correlate it with any acquired CT slice images as required, and generate a radiation dose SR.
generateDoseReportInformationFromFiles(Vector, boolean) - Static method in class com.pixelmed.doseocr.RenderedDoseReport
Extract dose information from a screen or report, correlate it with any acquired CT slice images as required, and generate a human-readable report.
generateDoseReportInformationFromFiles(Vector, boolean, String) - Static method in class com.pixelmed.doseocr.RenderedDoseReport
Extract dose information from a screen or report, correlate it with any acquired CT slice images as required, and generate a human-readable report.
generateDoseSR(DatabaseInformationModel, DatabaseTreeRecord[], MessageLogger, SafeProgressBarUpdaterThread, int, int) - Method in class com.pixelmed.apps.DoseUtility
 
generateDoseSR(DatabaseInformationModel, DatabaseTreeRecord, MessageLogger, SafeProgressBarUpdaterThread, int, int) - Method in class com.pixelmed.apps.DoseUtility
 
generateFrameTypeSharedFunctionalGroup(AttributeList, AttributeTag, Attribute) - Static method in class com.pixelmed.dicom.FunctionalGroupUtilities
Insert a shared functional group sequence FrameTypeSequence entry.
generateGeometryFunctionalGroupsFromAnalyzeHeader(AnalyzeHeader, AttributeList, int) - Static method in class com.pixelmed.convert.AnalyzeToDicom
Read a per-frame and shared functional group sequences for the geometry defined in a Analyze file header.
generateGeometryFunctionalGroupsFromNIfTI1Header(NIfTI1Header, AttributeList, int) - Static method in class com.pixelmed.convert.NIfTI1ToDicom
Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.
generateGeometryFunctionalGroupsFromNRRDHeader(NRRDHeader, AttributeList) - Static method in class com.pixelmed.convert.NRRDToDicom
Read a per-frame and shared functional group sequences for the geometry defined in a NRRD file header.
generateGeometryFunctionalGroupsFromRawRGBInformation(RawRGBInformation, AttributeList, int) - Static method in class com.pixelmed.convert.RawRGBToDicomMultiFrame
Read a per-frame and shared functional group sequences for the geometry defined in a raw image file description.
generatePixelValueTransformationFunctionalGroup(AttributeList, int, double, double, String) - Static method in class com.pixelmed.dicom.FunctionalGroupUtilities
Insert a shared functional group sequence Pixel Value Transformation Sequence entry.
GenerateRadiationDoseStructuredReport - Class in com.pixelmed.doseocr
 
GenerateRadiationDoseStructuredReport() - Constructor for class com.pixelmed.doseocr.GenerateRadiationDoseStructuredReport
 
generateResponseToGetRequest(String, OutputStream) - Method in class com.pixelmed.web.HttpServer.Worker
 
generateResponseToGetRequest(String, OutputStream) - Method in class com.pixelmed.web.RequestTypeServer.RequestTypeWorker
 
generateResponseToGetRequest(String, OutputStream) - Method in class com.pixelmed.web.WadoServer.WADOWorker
 
generateSyntheticStudyFromOriginal(List<String>, String, String, String, String, String, String) - Method in class com.pixelmed.apps.MultiModalitySimulator
 
generateUnassignedConvertedAttributesSequenceFunctionalGroups(AttributeList, int) - Static method in class com.pixelmed.dicom.FunctionalGroupUtilities
Create shared and per-frame Unassigned Converted Attributes functional group sequences if not already present.
generateVOILUTFunctionalGroup(AttributeList, int, double, double, String) - Static method in class com.pixelmed.dicom.FunctionalGroupUtilities
Insert a shared functional group sequence Frame VOI LUT Sequence entry.
generator - Variable in class com.pixelmed.apps.TiledPyramid
 
GenericImplantTemplateStorage - Static variable in class com.pixelmed.dicom.SOPClass
 
geometry - Variable in class com.pixelmed.dicom.CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
 
GeometryOfSlice - Class in com.pixelmed.geometry
A class to describe the spatial geometry of a single cross-sectional image slice.
GeometryOfSlice() - Constructor for class com.pixelmed.geometry.GeometryOfSlice
Construct an empty geometry.
GeometryOfSlice(Vector3d, Vector3d, Point3d, Tuple3d, double, Tuple3d) - Constructor for class com.pixelmed.geometry.GeometryOfSlice
Construct the geometry.
GeometryOfSlice(double[], double[], double[], double[], double, double[]) - Constructor for class com.pixelmed.geometry.GeometryOfSlice
Construct the geometry.
GeometryOfSliceFromAttributeList - Class in com.pixelmed.dicom
A class to extract and describe the spatial geometry of a single cross-sectional image slice, given a list of DICOM attributes.
GeometryOfSliceFromAttributeList(AttributeList) - Constructor for class com.pixelmed.dicom.GeometryOfSliceFromAttributeList
Construct the geometry from the Image Plane Module and related attributes.
GeometryOfVolume - Class in com.pixelmed.geometry
A class to describe the spatial geometry of an entire volume of contiguous cross-sectional image slices.
GeometryOfVolume() - Constructor for class com.pixelmed.geometry.GeometryOfVolume
 
GeometryOfVolume(GeometryOfSlice[]) - Constructor for class com.pixelmed.geometry.GeometryOfVolume
 
GeometryOfVolumeFromAttributeList - Class in com.pixelmed.dicom
A class to extract and describe the spatial geometry of an entire volume of contiguous cross-sectional image slices, given a list of DICOM attributes.
GeometryOfVolumeFromAttributeList(AttributeList, int[]) - Constructor for class com.pixelmed.dicom.GeometryOfVolumeFromAttributeList
Construct the geometry from the Per-frame and Shared Functional Group Sequences of a subset of frames of a multi-frame object, or from the Image Plane Module and related attributes, if there is only a single frame of a non-multi-frame object.
GeometryOfVolumeFromAttributeList(AttributeList) - Constructor for class com.pixelmed.dicom.GeometryOfVolumeFromAttributeList
Construct the geometry from the Per-frame and Shared Functional Group Sequences of a multi-frame object, or from the Image Plane Module and related attributes, if there is only a single frame of a non-multi-frame object.
get(AttributeTag) - Method in class com.pixelmed.dicom.AttributeList
Returns the value (attribute) to which this map maps the specified key (tag).
get(AttributeTag, String) - Method in class com.pixelmed.dicom.AttributeList
Returns the private data element specified by the tag and creator.
getAbbreviationFromImageLateralityViewModifierAndViewModifierCodeSequenceAttributes(AttributeList) - Static method in class com.pixelmed.display.MammoDemographicAndTechniqueAnnotations
Return an abbreviation for laterality, view and view modifier.
getAbbreviationFromUID(String) - Static method in class com.pixelmed.dicom.SOPClassDescriptions
 
getAbsoluteRange() - Method in class com.pixelmed.dose.ScanRange
 
getAbsoluteRangeAsDouble() - Method in class com.pixelmed.dose.ScanRange
 
getAbstractSyntaxUID() - Method in class com.pixelmed.network.PresentationContext
 
getAbstractSyntaxUID() - Method in class com.pixelmed.network.SCUSCPRoleSelection
 
getAcceptorMaximumLengthReceived() - Method in class com.pixelmed.network.NetworkApplicationProperties
Return the Maximum Length Received for the Association Acceptor.
getAcceptorSocketReceiveBufferSize() - Method in class com.pixelmed.network.NetworkApplicationProperties
Return the TCP socket receive buffer size for the Association Acceptor.
getAcceptorSocketSendBufferSize() - Method in class com.pixelmed.network.NetworkApplicationProperties
Return the TCP socket send buffer size for the Association Acceptor.
getAcquisition(int) - Method in class com.pixelmed.dose.CTDose
 
getAcquisitionParameters() - Method in class com.pixelmed.dose.CTDoseAcquisition
 
getAcquisitionParametersByAcquisitionNumberAndStudyInstanceUID(String) - Method in class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
getAcquisitionParametersBySeriesNumberScanRangeAndStudyInstanceUID(String) - Method in class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
getAcquisitionParametersForIrradiationEvent(String) - Method in class com.pixelmed.dose.CTIrradiationEventDataFromImages
 
getAcquisitionProtocol() - Method in class com.pixelmed.dose.CTAcquisitionParameters
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CEchoRequestCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CEchoResponseCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CFindRequestCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CFindResponseCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CGetRequestCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CGetResponseCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CMoveRequestCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CMoveResponseCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CStoreRequestCommandMessage
 
getAffectedSOPClassUID() - Method in class com.pixelmed.network.CStoreResponseCommandMessage
 
getAffectedSOPInstanceUID() - Method in class com.pixelmed.network.CStoreRequestCommandMessage
 
getAffectedSOPInstanceUID() - Method in class com.pixelmed.network.CStoreResponseCommandMessage
 
getAgeBetweenAsDICOMAgeString(String, String) - Static method in class com.pixelmed.utils.DateUtilities
Get a DICOM Age String (AS) VR form age between two dates.
getAgeBetweenAsDICOMAgeString(Date, Date) - Static method in class com.pixelmed.utils.DateUtilities
Get a DICOM Age String (AS) VR form age between two dates.
getAgeBetweenAsDICOMAgeString(Calendar, Calendar) - Static method in class com.pixelmed.utils.DateUtilities
Get a DICOM Age String (AS) VR form age between two dates.
getAlertAccumulatedCTDIvolForwardEstimate() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertAccumulatedDLPForwardEstimate() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertCTDIvolValue() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertCTDIvolValueConfigured() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertDLPValue() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertDLPValueConfigured() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertPerson() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAlertReasonForProceeding() - Method in class com.pixelmed.dose.CTDoseCheckDetails
 
getAllAttributesReturnedInIdentifier() - Method in class com.pixelmed.query.QueryTreeRecord
Get the list of all the DICOM attributes from the query response for this level of the query.
getAllInformationEntitiesToIncludeAtThisQueryLevel(InformationEntity) - Method in class com.pixelmed.query.QueryInformationModel
 
getAllInformationEntitiesToIncludeAtThisQueryLevel(InformationEntity) - Method in class com.pixelmed.query.StudyRootQueryInformationModel
 
getAllowsChildren() - Method in class com.pixelmed.database.DatabaseTreeRecord
Always returns true, since children may always be added.
getAllowsChildren() - Method in class com.pixelmed.dicom.AttributeTreeRecord
Always returns true, since children may always be added.
getAllowsChildren() - Method in class com.pixelmed.dicom.ContentItem
Always returns true, since children may always be added.
getAllowsChildren() - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
getAllowsChildren() - Method in class com.pixelmed.query.QueryTreeRecord
Always returns true, since children may always be added.
getAllowsChildren() - Method in class com.pixelmed.scpecg.SCPTreeRecord
Always returns true, since children may always be added.
getAmplitudeScalingFactorInMilliVolts() - Method in class com.pixelmed.displaywave.SourceECG
 
getAmplitudeValueMultiplier() - Method in class com.pixelmed.scpecg.Section5Or6
 
getAnatomy() - Method in class com.pixelmed.dose.CTAcquisitionParameters
 
getAnatomyConcepts() - Static method in class com.pixelmed.anatproc.CTAnatomy
 
getAnatomyConcepts() - Static method in class com.pixelmed.anatproc.ProjectionXRayAnatomy
 
getAnnotation() - Method in class com.pixelmed.dicom.SpatialCoordinateAndImageReference
Get the annotation.
getAnnotation() - Method in class com.pixelmed.web.WadoRequest
 
getAnonymize() - Method in class com.pixelmed.web.WadoRequest
 
getAnotherNewUID() - Method in class com.pixelmed.dicom.UIDGenerator
Get a different new UID for any purpose.
getApplicationEntityMap() - Method in class com.pixelmed.network.NetworkApplicationInformation
Return the application entity map.
getApplicationEntityMap() - Method in class com.pixelmed.network.NetworkApplicationInformationFederated
Return the application entity map.
getApplicationEntityTitleFromLocalName(String) - Method in class com.pixelmed.network.NetworkApplicationInformation
Find the AET an application entity given its local name.
getApplicationEntityTitleFromLocalName(String) - Method in class com.pixelmed.network.NetworkApplicationInformationFederated
Find the AET an application entity given its local name.
getApplicationEventDispatcher() - Static method in class com.pixelmed.event.ApplicationEventDispatcher
 
getApplicationPropertyFileName() - Method in class com.pixelmed.display.ApplicationFrame
Get the name of the property file set for the application.
getAppliedToUnderlyingImage(GeometryOfVolume, int, double) - Method in class com.pixelmed.display.SuperimposedImage
 
getAppliedToUnderlyingImage(GeometryOfVolume, int) - Method in class com.pixelmed.display.SuperimposedImage
 
getArrayOfCodedSequenceItemsOrNull(AttributeList, AttributeTag) - Static method in class com.pixelmed.dicom.CodedSequenceItem
Extract the items of a coded sequence attribute contained within a list of attributes.
getArrayOfCodedSequenceItemsOrNull(Attribute) - Static method in class com.pixelmed.dicom.CodedSequenceItem
Extract the items of a coded sequence attribute.
getArrayOfIntegerValueOrThrowException(String) - Method in class com.pixelmed.convert.NRRDHeader
 
getArrayOfSingleStringValueOrDefaultOfNamedAttributeWithinSequenceItems(AttributeList, AttributeTag, AttributeTag, String, NumberFormat) - Static method in class com.pixelmed.dicom.SequenceAttribute
Extract the string values of the specified attribute from within all the items of the specified sequence from within a list of attributes.
getArrayOfSingleStringValueOrDefaultOfNamedAttributeWithinSequenceItems(AttributeList, AttributeTag, AttributeTag, String) - Static method in class com.pixelmed.dicom.SequenceAttribute
Extract the string values of the specified attribute from within all the items of the specified sequence from within a list of attributes.
getArrayOfSingleStringValueOrEmptyStringOfNamedAttributeWithinSequenceItems(AttributeList, AttributeTag, AttributeTag) - Static method in class com.pixelmed.dicom.SequenceAttribute
Extract the string values of the specified attribute from within all the items of the specified sequence from within a list of attributes.
getAsSequenceAttribute() - Method in class com.pixelmed.dicom.CodingSchemeIdentification
Get as a CodingSchemeIdentificationSequence attribute.
getAsSequenceItem() - Method in class com.pixelmed.dicom.CodingSchemeIdentificationItem
 
getAssociationNumber() - Method in class com.pixelmed.network.Association
 
getAssociationOutputStream(byte) - Method in class com.pixelmed.network.Association
A factory method to build an AssociationOutputStream for this Association, on which to send data which is fragmented as appropriate into PDUs.
getAsString(byte[]) - Static method in class com.pixelmed.dicom.ValueRepresentation
 
getAtrialRate() - Method in class com.pixelmed.scpecg.Section7
 
getAttribute() - Method in class com.pixelmed.dicom.AttributeTreeRecord
Get the attribute corresponding to this record.
getAttributeList() - Method in class com.pixelmed.dicom.CodedSequenceItem
Get the list of attributes in the CodedSequenceItem.
getAttributeList() - Method in class com.pixelmed.dicom.ColorPalette
 
getAttributeList() - Method in class com.pixelmed.dicom.CompositeInstanceContext
Return the AttributeList of all the Attributes in the context.
getAttributeList() - Method in class com.pixelmed.dicom.ContentItem
Get the attribute list of this content item.
getAttributeList() - Method in class com.pixelmed.dicom.DicomDirectoryRecord
 
getAttributeList() - Method in class com.pixelmed.dicom.FileMetaInformation
Get the attribute list in this instance of the file meat information.
getAttributeList() - Method in class com.pixelmed.dicom.ImageLibrary
 
getAttributeList() - Method in class com.pixelmed.dicom.PersonIdentification
Get the list of attributes for a Person Identification Macro.
getAttributeList() - Method in class com.pixelmed.dicom.SequenceItem
Get the list of attributes in this item.
getAttributeList() - Method in class com.pixelmed.dicom.SetOfDicomFiles.DicomFile
 
getAttributeList() - Method in class com.pixelmed.dicom.StructuredReport
Return the entire content tree of a structured report as an AttributeList.
getAttributeList(Document) - Method in class com.pixelmed.dicom.XMLRepresentationOfDicomObjectFactory
Given a DICOM object encoded as an XML document convert it to a list of attributes.
getAttributeList(InputStream) - Method in class com.pixelmed.dicom.XMLRepresentationOfDicomObjectFactory
Given a DICOM object encoded as an XML document in a stream convert it to a list of attributes.
getAttributeList(String) - Method in class com.pixelmed.dicom.XMLRepresentationOfDicomObjectFactory
Given a DICOM object encoded as an XML document in a named file convert it to a list of attributes.
getAttributeList(Document) - Method in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
Given a DICOM SR object encoded as an XML document convert it to a list of attributes.
getAttributeList(InputStream) - Method in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
Given a DICOM SR object encoded as an XML document in a stream convert it to a list of attributes.
getAttributeList(String) - Method in class com.pixelmed.dicom.XMLRepresentationOfStructuredReportObjectFactory
Given a DICOM SR object encoded as an XML document in a named file convert it to a list of attributes.
getAttributeList() - Method in class com.pixelmed.display.event.SourceImageSelectionChangeEvent
 
getAttributeList() - Method in class com.pixelmed.display.event.SourceSpectrumSelectionChangeEvent
 
getAttributeList() - Method in class com.pixelmed.dose.CTDose
 
getAttributeListFromCommandOrData(byte[], String) - Static method in class com.pixelmed.network.CompositeResponseHandler
Extract an AttributeList from the concatenated bytes that have been assembled from one or more PDUs and which make up an entire Command or Dataset.
getAttributeListFromSelectedItemWithinSequence(SequenceAttribute, int) - Static method in class com.pixelmed.dicom.SequenceAttribute
Extract the AttributeList of the particular item in the sequence.
getAttributeListFromWithinSequenceWithSingleItem(SequenceAttribute) - Static method in class com.pixelmed.dicom.SequenceAttribute
Extract the AttributeList of the first item from a sequence.
getAttributeListFromWithinSequenceWithSingleItem(AttributeList, AttributeTag) - Static method in class com.pixelmed.dicom.SequenceAttribute
Extract the AttributeList of the first item from a specified sequence from within a list of attributes.
getAttributeLists() - Method in class com.pixelmed.dicom.SetOfDicomFiles
Get the attribute lists for all files, if they were kept during creation.
getAttributeTagFromDatabaseColumnName(String) - Method in class com.pixelmed.database.DatabaseInformationModel
Get the name of the DICOM element corresponding to the database table column.
getAttributeTagFromKeywordOrGroupAndElement(String) - Method in class com.pixelmed.apps.SetCharacteristicsFromSummary
 
getAttributeTagOfCountOfChildren(InformationEntity) - Method in class com.pixelmed.query.QueryInformationModel
 
getAttributeTagsInAttributeListWithValues(AttributeList) - Static method in class com.pixelmed.dicom.