com.pixelmed.dicom

Class EncapsulateImageInDicom

java.lang.Object

com.pixelmed.dicom.EncapsulateImageInDicom

public class EncapsulateImageInDicom
extends java.lang.Object

A class for encapsulating compressed grayscale or RGB consumer image format input files (that JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.

Constructor Summary

Constructors

Constructor and Description

EncapsulateImageInDicom(java.lang.String inputFile, java.lang.String outputFile, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber, java.lang.String modality, java.lang.String sopClass, AttributeList sourceList) Read a consumer image format input file (anything JIIO can recognize), and create a DICOM image of the specified SOP Class, or a single or multi frame DICOM Secondary Capture image.

Method Summary

Modifier and Type	Method and Description
static AttributeList	generateDICOMPixelModuleFromConsumerImageFile(java.io.File inputFile, AttributeList list) Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.
static AttributeList	generateDICOMPixelModuleFromConsumerImageFile(java.lang.String inputFile) Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.
static AttributeList	generateDICOMPixelModuleFromConsumerImageFile(java.lang.String inputFile, AttributeList list) Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.
protected static short	getBitsPerSample(org.w3c.dom.Node metadata)
static short	getColumns(org.w3c.dom.Node metadata)
protected static java.lang.String	getCompressionType(org.w3c.dom.Node metadata)
protected static short	getElementAttributeFromMetadata(org.w3c.dom.Node metadata, java.lang.String elementName, java.lang.String attributeName)
protected static short	getJPEGProcess(org.w3c.dom.Node metadata)
protected static java.lang.String	getPhotometricInterpretation(org.w3c.dom.Node metadata)
static short	getRows(org.w3c.dom.Node metadata)
protected static short	getSamplePrecision(org.w3c.dom.Node metadata)
protected static short	getSamplesPerPixel(org.w3c.dom.Node metadata)
protected static java.lang.String	getTransferSyntaxUIDFromJPEGProcess(short process)
static void	main(java.lang.String[] arg) Read a compressed grayscale or RGB consumer image format input file (that JIIO can recognize), and encapsulate it in an image of the specified SOP Class, or a single or multi frame DICOM Secondary Capture image.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EncapsulateImageInDicom

public EncapsulateImageInDicom(java.lang.String inputFile,
                               java.lang.String outputFile,
                               java.lang.String patientName,
                               java.lang.String patientID,
                               java.lang.String studyID,
                               java.lang.String seriesNumber,
                               java.lang.String instanceNumber,
                               java.lang.String modality,
                               java.lang.String sopClass,
                               AttributeList sourceList)
                        throws java.io.IOException,
                               DicomException

Read a consumer image format input file (anything JIIO can recognize), and create a DICOM image of the specified SOP Class, or a single or multi frame DICOM Secondary Capture image.

Parameters:

inputFile - consumer image format input file

outputFile - DICOM output image

patientName - patient name

patientID - patient ID

studyID - study ID

seriesNumber - series number

instanceNumber - instance number

modality - may be null

sopClass - may be null

sourceList - list of attributes to use rather than supplied or generated values, may be null or empty

Throws:

java.io.IOException - if an I/O error occurs

DicomException - if error in DICOM encoding

Method Detail

generateDICOMPixelModuleFromConsumerImageFile

public static AttributeList generateDICOMPixelModuleFromConsumerImageFile(java.io.File inputFile,
                                                                          AttributeList list)
                                                                   throws java.io.IOException,
                                                                          DicomException

Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.

Parameters:

inputFile - a compressed consumer format image file (e.g., 8 or > 8 bit JPEG, JPEG 2000)

list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use

Returns:

attribute list with Image Pixel Module (including Pixel Data) added

Throws:

java.io.IOException - if an I/O error occurs

DicomException - if error in DICOM encoding

generateDICOMPixelModuleFromConsumerImageFile

public static AttributeList generateDICOMPixelModuleFromConsumerImageFile(java.lang.String inputFile)
                                                                   throws java.io.IOException,
                                                                          DicomException

Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.

Parameters:

inputFile - a consumer format image file (e.g., 8 or > 8 bit JPEG, JPEG 2000, GIF, etc.)

Returns:

a new attribute list with Image Pixel Module (including Pixel Data) added

Throws:

java.io.IOException - if an I/O error occurs

DicomException - if error in DICOM encoding

generateDICOMPixelModuleFromConsumerImageFile

public static AttributeList generateDICOMPixelModuleFromConsumerImageFile(java.lang.String inputFile,
                                                                          AttributeList list)
                                                                   throws java.io.IOException,
                                                                          DicomException

Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.

Parameters:

inputFile - a compressed consumer format image file (e.g., 8 or > 8 bit JPEG, JPEG 2000)

list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use

Returns:

attribute list with Image Pixel Module (including Pixel Data) added

Throws:

java.io.IOException - if an I/O error occurs

DicomException - if error in DICOM encoding

getBitsPerSample

protected static short getBitsPerSample(org.w3c.dom.Node metadata)

getColumns

public static short getColumns(org.w3c.dom.Node metadata)

getCompressionType

protected static java.lang.String getCompressionType(org.w3c.dom.Node metadata)

getElementAttributeFromMetadata

protected static short getElementAttributeFromMetadata(org.w3c.dom.Node metadata,
                                                       java.lang.String elementName,
                                                       java.lang.String attributeName)

getJPEGProcess

protected static short getJPEGProcess(org.w3c.dom.Node metadata)

getPhotometricInterpretation

protected static java.lang.String getPhotometricInterpretation(org.w3c.dom.Node metadata)

getRows

public static short getRows(org.w3c.dom.Node metadata)

getSamplePrecision

protected static short getSamplePrecision(org.w3c.dom.Node metadata)

getSamplesPerPixel

protected static short getSamplesPerPixel(org.w3c.dom.Node metadata)

getTransferSyntaxUIDFromJPEGProcess

protected static java.lang.String getTransferSyntaxUIDFromJPEGProcess(short process)

main

public static void main(java.lang.String[] arg)

Read a compressed grayscale or RGB consumer image format input file (that JIIO can recognize), and encapsulate it in an image of the specified SOP Class, or a single or multi frame DICOM Secondary Capture image.

Parameters:

arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class