Package com.pixelmed.dicom

Classes for constructing, reading, writing and manipulating DICOM composite objects.

See: Description

Interface Summary

Interface	Description
AttributeList.ReadTerminationStrategy	An interface to supply the criteria for prematurely terminating the reading of a DICOM file.
ByteFrameSource

Class Summary

Class	Description
AgeStringAttribute	A concrete class specializing Attribute for Age String (AS) attributes.
ApplicationEntityAttribute	A concrete class specializing Attribute for Application Entity (AE) attributes.
ArrayCopyUtilities	A class of static methods for copying data between arrays of different types, expanding arrays, and comparing them, and removing padding from strings.
AsynchronousOutputStream	A class that extends FilterOutputStream by creating a separate thread to actually perform the output operations, and returning immediately from write calls, but blocking on closing.
Attribute	The Attribute class is an abstract class that contains the core functionality for storing, accessing and maintaining values of a DICOM Attribute.
AttributeFactory	The AttributeFactory class is a factory class of static methods for creating concrete instances of the abstract class Attribute based on their value representation.
AttributeList	The AttributeList class maintains a list of individual DICOM attributes.
AttributeListFunctionalGroupsTableModel	The abstract AttributeListFunctionalGroupsTableModel class extends a AttributeListTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table in order to provide support for a AttributeListTableBrowser.
AttributeListFunctionalGroupsTableModelAllFrames	The abstract AttributeListFunctionalGroupsTableModelAllFrames class extends a AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a row for each frame in order to provide support for a AttributeListTableBrowser.
AttributeListFunctionalGroupsTableModelOneFrame	The abstract AttributeListFunctionalGroupsTableModelOneFrame class extends a AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a single row for a single frame in order to provide support for a AttributeListTableBrowser.
AttributeListTableBrowser	The AttributeListTableBrowser class implements a Swing graphical user interface to browse the contents of an AttributeListTableModel.
AttributeListTableModel	The AttributeListTableModel class extends a AbstractTableModel to abstract the contents of a list of attributes as a single row table in order to provide support for a AttributeListTableBrowser.
AttributeTag	An individual DICOM data element (attribute) tag that includes a group and element (each a 16 bit unsigned binary).
AttributeTagAttribute	A concrete class specializing Attribute for Attribute Tag (AT) attributes.
AttributeTree	The AttributeTree class implements a TreeModel to abstract the contents of a list of attributes as a tree in order to provide support for a AttributeTreeBrowser.
AttributeTreeBrowser	The AttributeTreeBrowser class implements a Swing graphical user interface to browse the contents of an AttributeTree.
AttributeTreeRecord	Instances of the AttributeTreeRecord class represent nodes in a tree of the AttributeTree class, which in turn is used by the AttributeTreeBrowser class.
BinaryInputStream	A class that extends FilterInputStream by adding the concept of little and big endian binary value encoding, and supplies functions for reading various sized integer and floating point words.
BinaryOutputStream	A class that extends FilterOutputStream by adding the concept of little and big endian binary value encoding, and supplies functions for writing various sized integer and floating point words.
ClinicalTrialsAttributes	An abstract class of static methods to support removing identifying attributes and adding Clinical Trials Patient, Study and Series Modules attributes.
CodedSequenceItem	A class to encapsulate the attributes contained within a Sequence Item that represents a Coded Sequence item.
CodeStringAttribute	A concrete class specializing Attribute for Code String (CS) attributes.
CodingSchemeIdentification	A class to encapsulate the information related to Coding Scheme Identification encoded in composite instances within CodingSchemeIdentificationSequence.
CodingSchemeIdentificationItem	A class to encapsulate the attributes of an Item of CodingSchemeIdentificationSequence.
CoercionModel	A class to encapsulate patient and study information to be used for coercion of identifiers in DICOM instances.
ColorPalette	A class to encapsulate color palettes, including serialization and deserialization to and from standard DICOM color palette IODs.
ColorPaletteHotIron	Standard DICOM Hot Iron color palette.
ColorPaletteHotMetalBlue	Standard DICOM Hot Metal Blue color palette.
ColorPalettePET	Standard DICOM PET color palette.
ColorPalettePET20Step	Standard DICOM PET 20 Step color palette.
CompositeInstanceContext	A class for representing the attributes of general modules that describe the patient, study, series, instance and related "context" of the payload of a composite DICOM instance.
CompositeInstanceContext.Selector	A class to select which entities are copied or propagated or removed or not during operations on CompositeInstanceContext.
CompressedFrameDecoder	The CompressedFrameDecoder class implements decompression of selected frames in various supported Transfer Syntaxes once already extracted from DICOM encapsulated images.
CompressedFrameEncoder	The CompressedFrameEncoder class implements compression of specified frames in various supported Transfer Syntaxes, which can then be incorporated in DICOM encapsulated images.
ContentItem	An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).
ContentItemFactory	A class with methods for constructing a ContentItem of the appropriate class from a list of attributes.
ContentItemWithReference	An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).
ContentItemWithValue	An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).
CrossSectionalImageLibrary
CrossSectionalImageLibrary.CrossSectionalImageLibraryEntry
DateAttribute	A concrete class specializing Attribute for Date (DT) attributes.
DateTimeAttribute	A concrete class specializing Attribute for Date Time (DT) attributes.
DecimalStringAttribute	A concrete class specializing Attribute for Decimal String (DS) attributes.
DescriptionFactory	A class of static methods to provide descriptions of images, including image orientation relative to the patient from the mathematical position and orientation attributes, and including other descriptive attributes such as from dicom directory records and images using multi-frame functional groups.
DicomDictionary	The DicomDictionary class is a complete standard dictionary of DICOM attributes and associated information.
DicomDictionaryBase	The DicomDictionaryBase class is an abstract class for creating and accessing a dictionary of DICOM attributes and associated information.
DicomDirectory
DicomDirectoryBrowser
DicomDirectoryRecord
DicomDirectoryRecordFactory
DicomDirectoryRecordType
DicomFileUtilities	Various static methods helpful for handling DICOM files.
DicomInputStream	A class that extends BinaryInputStream by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.
DicomOutputStream	A class that extends BinaryOutputStream by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.
DicomStreamCopier	A class to copy DICOM attributes from anm input stream to an output stream, converting the encoding of the attributes between transfer syntaxes if necessary.
DisplayShutter	A set of display shutter parameters constructed from the attributes of the DICOM Display Shutter Module.
EncapsulatedInputStream	A class that extends InputStream by adding a mechanism for unencapsulating an undefined length DICOM attribute, such as is used for compressed Pixel Data.
EncapsulateImageInDicom	A class for encapsulating compressed grayscale or RGB consumer image format input files (that JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.
FileMetaInformation	A class to abstract the contents of a file meta information header as used for a DICOM PS 3.10 file, with additional static methods to add to and extract from an existing list of attributes.
FloatDoubleAttribute	A concrete class specializing Attribute for Float Double (FD) attributes.
FloatSingleAttribute	A concrete class specializing Attribute for Float Single (FL) attributes.
FrameSet	A class to describe a set of frames sharing common characteristics suitable for display or analysis as an entity.
FunctionalGroupUtilities	A class contain useful methods for manipulating Functional Group Sequences.
FunctionalGroupUtilities.Selector	A class to select which functional groups are copied or propagated or removed or not during operations on functional groups.
GeometryOfSliceFromAttributeList	A class to extract and describe the spatial geometry of a single cross-sectional image slice, given a list of DICOM attributes.
GeometryOfVolumeFromAttributeList	A class to extract and describe the spatial geometry of an entire volume of contiguous cross-sectional image slices, given a list of DICOM attributes.
HierarchicalImageReference	A class to represent the study, series and instance identifiers necessary to retrieve a specific single image or frame in a multi-frame image using the hierarchical model.
HierarchicalSOPInstanceReference	A class to represent the study, series and instance identifiers necessary to retrieve a specific instance using the hierarchical model.
ImageLibrary
ImageLibrary.ImageLibraryEntry
ImageReference	A class to represent a non-hierarchical image reference.
ImageToDicom	A class for converting RGB consumer image format input files (anything JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.
InformationEntity	A class to provide enumerated constants for the entities of the DICOM Information Model.
IntegerStringAttribute	A concrete class specializing Attribute for Integer String (IS) attributes.
JSONRepresentationOfDicomObjectFactory	A class to encode a representation of a DICOM object in a JSON form, and to convert it back again.
JSONRepresentationOfStructuredReportObjectFactory	A class to encode a representation of a DICOM Structured Report object in a JSON form, suitable for analysis as human-readable text.
LongStringAttribute	A concrete class specializing Attribute for Long String (LO) attributes.
LongTextAttribute	A concrete class specializing Attribute for Long Text (LT) attributes.
LossyImageCompression	A class to categorize DICOM images as having been lossy compressed or not.
MediaImporter	This class is designed to support the importation of DICOM files from interchange media (such as CDs and DVDs).
MediaImporter.MediaImporterWithFileChooserDialogThread	A class that implements Runnable so that it can be invoked by EventQueue.invokeAndWait().
MediaImporter.OurReadTerminationStrategy
ModalityTransform	A transformation constructed from a DICOM attribute list that extracts those attributes that define the Modality LUT transformation, specifically the window center and width attributes.
MoveDicomFilesIntoHierarchy	This class provides a main method that recursively searches the supplied paths for DICOM files and moves them into a folder hierarchy based on their attributes.
MoveDicomFilesIntoHierarchy.OurReadTerminationStrategy
MultiFrameImageFactory	A class to create a set of instances, which when given unenhanced ("classic") images creates one or more enhanced multiframe image instances from them where possible, otherwise leaves them alone but includes them in the set.
MultiFramePixelData
NullOutputStream	A class that extends OutputStream to discard output.
OtherAttributeOnDisk	An abstract class specializing Attribute for Other (OB or OW) attributes whose values are not memory resident.
OtherByteAttribute	A concrete class specializing Attribute for Other Byte (OB) attributes.
OtherByteAttributeCompressedSeparateFramesOnDisk	A concrete class specializing Attribute for Other Byte (OB) attributes whose compressed frames are not memory resident.
OtherByteAttributeMultipleCompressedFilesOnDisk	A concrete class specializing Attribute for Other Byte (OB) attributes whose values are not memory resident but rather are stored in multiple compressed files on disk.
OtherByteAttributeMultipleCompressedFrames	A concrete class specializing Attribute for Other Byte (OB) attributes whose values are memory or file resident compressed pixel data frames.
OtherByteAttributeMultipleFilesOnDisk	A concrete class specializing Attribute for Other Byte (OB) attributes whose values are not memory resident but rather are stored in multiple files on disk.
OtherByteAttributeMultipleFrameArrays	A concrete class specializing Attribute for Other Byte (OB) attributes whose values are an array of bytes per frame rather than a single contiguous array containing all frames.
OtherByteAttributeOnDisk	A concrete class specializing Attribute for Other Byte (OB) attributes whose values are not memory resident.
OtherDoubleAttribute	A concrete class specializing Attribute for Other Double (OD) attributes.
OtherFloatAttribute	A concrete class specializing Attribute for Other Float (OF) attributes.
OtherFloatAttributeMultipleFilesOnDisk	A concrete class specializing Attribute for Other Float (OF) attributes whose values are not memory resident but rather are stored in multiple files on disk.
OtherLongAttribute	A concrete class specializing Attribute for Other Long (OL) attributes.
OtherVeryLongAttribute	A concrete class specializing Attribute for Other Very Long (OV) attributes.
OtherWordAttribute	A concrete class specializing Attribute for Other Word (OW) attributes.
OtherWordAttributeMultipleFilesOnDisk	A concrete class specializing Attribute for Other Word (OW) attributes whose values are not memory resident but rather are stored in multiple files on disk.
OtherWordAttributeMultipleFrameArrays	A concrete class specializing Attribute for Other Word (OW) attributes whose values are an array of shorts per frame rather than a single contiguous array containing all frames.
OtherWordAttributeOnDisk	A concrete class specializing Attribute for Other Word (OW) attributes whose values are not memory resident.
Overlay	A set of bitmap overlays constructed from a DICOM attribute list.
PDFToDicomImage	A class for converting PDF files into a single or multi frame DICOM Secondary Capture image with one frame per page.
PersonIdentification	A class to provide support for the Person Identification Macro.
PersonNameAttribute	A concrete class specializing Attribute for Person Name (PN) attributes.
PixelSpacing	An class to extract and describe pixel spacing related information.
PrivatePixelData	This class includes standard and private mechanisms for handling float or double Pixel Data.
ProjectionXRayImageLibrary
ProjectionXRayImageLibrary.ProjectionXRayImageLibraryEntry
RealWorldValueTransform	A transformation constructed from a DICOM attribute list that extracts those attributes which describe how stored pixel values are translated into real world values (e.g., Hounsfield Units, cm/s).
SequenceAttribute	A concrete class specializing Attribute for Sequence (SQ) attributes.
SequenceItem	A class to provide support for the contents of an individual item of a DICOM Sequence (SQ) attribute, each of which consists of an entire dataset (list of attributes).
SetOfDicomFiles	A class to describe a set of DICOM files and their features such as SOP Class, Instance and Transfer Syntax UIDs.
SetOfFrameSets	A class to describe a set of frame sets, each of which shares common characteristics suitable for display or analysis as an entity.
ShortStringAttribute	A concrete class specializing Attribute for Short String (SH) attributes.
ShortTextAttribute	A concrete class specializing Attribute for Short Text (ST) attributes.
SignedLongAttribute	A concrete class specializing Attribute for Signed Long (SL) attributes.
SignedShortAttribute	A concrete class specializing Attribute for Signed Short (SS) attributes.
SignedVeryLongAttribute	A concrete class specializing Attribute for Signed Very Long (SV) attributes.
SingleOverlay	A single bitmap overlay plane
SOPClass	The abstract base class of classes that implement individual DICOM SOP Classes or groups of SOP Classes that behave similarly (for example the composite instance Storage SOP Classes).
SOPClassDescriptions	A class of static methods to provide a means of describing SOP Classes with abbreviations and hman-readable descriptions.
SOPInstanceReference	A class to represent a non-hierarchical instance reference.
SpatialCoordinateAndImageReference	A class to encapsulate information describing references in a structured report to images, with or without spatial coordinates.
SpecificCharacterSet	A class to encapsulate the functionality defined by the DICOM Specific Character Set attribute, including the ability to parse the string values of the attribute and then apply the appropriate character conversions from byte array values into Java's internal Unicode representation contained in String.
SpectroscopyVolumeLocalization	A class to extract and describe the spatial geometry of an MR spectroscopy localization volume, given a list of DICOM attributes.
StandaloneAttributeTreeBrowser	The StandaloneAttributeTreeBrowser class implements a Swing graphical user interface to browse the contents of an AttributeTree using an AttributeTreeBrowser.
StoredFilePathStrategy	This is an abstract class to support creating path names for how to organize the folders and files for stored composite instances based on their SOP Instance UID.
StoredFilePathStrategyComponentFolders	Store files in a hierarchy of folders using successive numeric components of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.
StoredFilePathStrategyHashSubFolders	Store files in a hierarchy of folders using successive decimal digits of the hashcode of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.
StoredFilePathStrategySingleFolder	Store files in a single folder, using the SOP Instance UID as the filename.
StringAttribute	An abstract class specializing Attribute for the family of string attributes.
StringAttributeAffectedBySpecificCharacterSet	An abstract class specializing Attribute for the family of string attributes that support different specific character sets.
StructuredReport	The StructuredReport class implements a TreeModel to abstract the contents of a list of attributes representing a DICOM Structured Report as a tree in order to provide support for a StructuredReportBrowser.
StructuredReportTreeBrowser	The StructuredReportTreeBrowser class implements a Swing graphical user interface to browse the contents of a StructuredReport.
SUVTransform	A transformation constructed from a DICOM attribute list that extracts those attributes which describe how stored pixel values are translated into PET SUV values.
TagFromName	The TagFromName class contains a selected list of constant values for frequently used AttributeTags.
TextAttribute	An abstract class specializing Attribute for the family of text attributes.
TiledFramesIndex	The TiledFramesIndex class ...
TimeAttribute	A concrete class specializing Attribute for Time (TM) attributes.
TransferSyntax	A class to represent the characteristics of a DICOM Transfer Syntax, which may be instantiated from a UID or from basic characteristics, as well as static UID strings for known Transfer Syntaxes, and static methods for extracting the characteristics of known Transfer Syntaxes.
TransferSyntaxFromName	A class to lookup the DICOM Transfer Syntax UID from a string name.
UIDGenerator	A class for generating new UIDs, deterministically or not, including potentially reproducible Study, Series and SOP Instance UIDs.
UniqueIdentifierAttribute	A concrete class specializing Attribute for Unique Identifier (UI) attributes.
UniversalResourceAttribute	A concrete class specializing Attribute for Unviversal Resource (UR) attributes.
UnknownAttribute	A concrete class specializing Attribute for Unknown (UN) attributes.
UnlimitedCharactersAttribute	A concrete class specializing Attribute for Unlimited Characters (UC) attributes.
UnlimitedTextAttribute	A concrete class specializing Attribute for Unlimited Text (UT) attributes.
UnPackBits
UnsignedLongAttribute	A concrete class specializing Attribute for Unsigned Long (UL) attributes.
UnsignedShortAttribute	A concrete class specializing Attribute for Unsigned Short (US) attributes.
UnsignedVeryLongAttribute	A concrete class specializing Attribute for Unsigned Very Long (UV) attributes.
ValueRepresentation	Utilities to support the concept of the DICOM Value Representation (VR), including two byte arrays for each VR, and tester methods that determine whether or not a particular two byte array is a particular type of VR.
VersionAndConstants	Various pre-defined constants for identifying this software.
Veterinary	A class of static methods for handling veterinary (animal) data.
VOITransform	A transformation constructed from a DICOM attribute list that extracts those attributes that define the VOI LUT transformation, specifically the window center and width attributes.
XMLRepresentationOfDicomObjectFactory	A class to encode a representation of a DICOM object in an XML form, suitable for analysis as human-readable text, or for feeding into an XSLT-based validator, and to convert them back again.
XMLRepresentationOfStructuredReportObjectFactory	A class to encode a representation of a DICOM Structured Report object in an XML form, suitable for analysis as human-readable text, or for feeding into an XSLT-based validator.

Exception Summary

Exception	Description
DicomException

Package com.pixelmed.dicom Description

Classes for constructing, reading, writing and manipulating DICOM composite objects.

Package Specification

Related Documentation

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