com.pixelmed.apps

Class ShrinkSegmentationToBoundingBox

java.lang.Object

com.pixelmed.apps.ShrinkSegmentationToBoundingBox

public class ShrinkSegmentationToBoundingBox
extends java.lang.Object

A class of static methods to read DICOM segmentation images, and shrink their extent to the minimum bounding box surrounding the segments.

Constructor Summary

Constructors

Constructor and Description
ShrinkSegmentationToBoundingBox(java.lang.String inputFileName, java.lang.String outputFileName) Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

Method Summary

Modifier and Type	Method and Description
protected void	addTLHCOfClippedRegionToImagePosition(AttributeList list, int[] box)
protected void	clipAllFramesToSpecifiedSize(AttributeList list, int[] box)
protected int[]	compute2DInPlaneBoundingBoxForSegments(AttributeList list)
protected static int	getBit(byte[] pixelData, int f, int r, int c, int rows, int columns)
static void	main(java.lang.String[] arg) Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.
protected static void	setBit(byte[] pixelData, int f, int r, int c, int rows, int columns)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ShrinkSegmentationToBoundingBox

public ShrinkSegmentationToBoundingBox(java.lang.String inputFileName,
                                       java.lang.String outputFileName)
                                throws DicomException,
                                       java.io.FileNotFoundException,
                                       java.io.IOException

Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

Parameters:

inputFileName - the input file name

outputFileName - the output file name

Throws:

DicomException

java.io.FileNotFoundException

java.io.IOException

Method Detail

addTLHCOfClippedRegionToImagePosition

protected void addTLHCOfClippedRegionToImagePosition(AttributeList list,
                                                     int[] box)
                                              throws DicomException

Throws:

DicomException

clipAllFramesToSpecifiedSize

protected void clipAllFramesToSpecifiedSize(AttributeList list,
                                            int[] box)
                                     throws DicomException

Throws:

DicomException

compute2DInPlaneBoundingBoxForSegments

protected int[] compute2DInPlaneBoundingBoxForSegments(AttributeList list)
                                                throws DicomException

Throws:

DicomException

getBit

protected static int getBit(byte[] pixelData,
                            int f,
                            int r,
                            int c,
                            int rows,
                            int columns)

main

public static void main(java.lang.String[] arg)

Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

Parameters:

arg - two parameters, the inputFile, outputFile

setBit

protected static void setBit(byte[] pixelData,
                             int f,
                             int r,
                             int c,
                             int rows,
                             int columns)