com.pixelmed.apps

Class MergeCompositeContextForOneEntitySelectively

java.lang.Object

com.pixelmed.apps.MergeCompositeContextForOneEntitySelectively

public class MergeCompositeContextForOneEntitySelectively
extends java.lang.Object

A class containing an application for merging the composite context of multiple instances for consistency.

The merge can be performed at a specified entity/module level or the default patient level.

All source files are presumed to be of the same entity at the specified or default level (e.g., the same patient) and no cross-references between instances are required.

Various known dummy values are treated as if they were zero length or absent if conflicting with non-dummy values.

See Also:

MergeCompositeContext

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
protected class	MergeCompositeContextForOneEntitySelectively.OurFirstPassMediaImporter
protected class	MergeCompositeContextForOneEntitySelectively.OurSecondPassMediaImporter

Field Summary

Fields

Modifier and Type	Field and Description
protected java.lang.String	dstFolderName
protected java.lang.String	ourAETitle
protected CompositeInstanceContext.Selector	selector

Constructor Summary

Constructors

Constructor and Description
MergeCompositeContextForOneEntitySelectively(CompositeInstanceContext.Selector selector, java.lang.String[] srcs, java.lang.String dstFolderName, MessageLogger logger) Merge the composite context of multiple instances for consistency.
MergeCompositeContextForOneEntitySelectively(CompositeInstanceContext.Selector selector, java.lang.String src, java.lang.String dstFolderName, MessageLogger logger) Merge the composite context of multiple instances for consistency.

Method Summary

Modifier and Type	Method and Description
protected boolean	isNonZeroLengthDummyValue(java.lang.String value)
static void	main(java.lang.String[] arg) Merge the composite context of multiple instances for consistency.
protected CompositeInstanceContext	mergeSelectedContext(CompositeInstanceContext newContext)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

dstFolderName

protected java.lang.String dstFolderName

ourAETitle

protected java.lang.String ourAETitle

selector

protected CompositeInstanceContext.Selector selector

Constructor Detail

MergeCompositeContextForOneEntitySelectively

public MergeCompositeContextForOneEntitySelectively(CompositeInstanceContext.Selector selector,
                                                    java.lang.String[] srcs,
                                                    java.lang.String dstFolderName,
                                                    MessageLogger logger)
                                             throws java.io.IOException,
                                                    DicomException

Merge the composite context of multiple instances for consistency.

Parameters:

selector - selected entities/modules to merge

srcs - source folders or DICOMDIRs

dstFolderName - destination folder

logger - logger to send progress, warnings and errors

Throws:

java.io.IOException - if there is a problem reading or writing

DicomException - if there is a problem parsing or extracting required content

MergeCompositeContextForOneEntitySelectively

public MergeCompositeContextForOneEntitySelectively(CompositeInstanceContext.Selector selector,
                                                    java.lang.String src,
                                                    java.lang.String dstFolderName,
                                                    MessageLogger logger)
                                             throws java.io.IOException,
                                                    DicomException

Merge the composite context of multiple instances for consistency.

Parameters:

selector - selected entities/modules to merge

src - source folder or DICOMDIR

dstFolderName - destination folder

logger - logger to send progress, warnings and errors

Throws:

java.io.IOException - if there is a problem reading or writing

DicomException - if there is a problem parsing or extracting required content

Method Detail

isNonZeroLengthDummyValue

protected boolean isNonZeroLengthDummyValue(java.lang.String value)

main

public static void main(java.lang.String[] arg)

Merge the composite context of multiple instances for consistency.

The files are processed in the order in which they are specified on the command line, and when there is a conflict, the first values are used. This can be used to make sure that all PatientIDs, for example are coerced to the first one specified.

For example, if a folder of images for a patient is specified first, and then a folder of structured reports or presentation states corresponding to those images but with different patient level identifiers is specified second, then the latter (the reports or presentation states) will be cooerced to have the same patient context as the former (the images).

Entity/module arguments recognized are -patient|-study|-equipment|-frameofreference|-series|-instance|srdocumentgeneral.

If no entity/module argument is specified, only the patient context will be merged.

Parameters:

arg - array of 2 or more strings - an optional list of entities/modules to merge, followed by one or more source folders or DICOMDIR (to merge and use as a source of context), and a destination folder

mergeSelectedContext

protected CompositeInstanceContext mergeSelectedContext(CompositeInstanceContext newContext)